View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0955_low_2 (Length: 481)
Name: NF0955_low_2
Description: NF0955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0955_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 26 - 481
Target Start/End: Complemental strand, 33293947 - 33293492
Alignment:
| Q |
26 |
atcatatttaaacgtcgctaaatccaggacattctgtagctacaagctcattcacaagcatgcaccatttgctaccattgaaaatgcctcattatttaac |
125 |
Q |
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| T |
33293947 |
atcatatttaaacgtcgctaaatccaggacattctgtagctacaagctcattcacaagcatgcaccatttgctaccattgaaaatgcctcattatttaac |
33293848 |
T |
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| Q |
126 |
caaccttcttcaattttttcttcactattacgtgaattctcaaatacccttatcgatgtcaaatccatccacgcacaaattatcagaaattatgcatcaa |
225 |
Q |
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| T |
33293847 |
caaccttcttcaattttttcttcactattacgtgaattctcaaatacccttatcgatgtcaaatccatccacgcacaaattatcagaaattatgcatcaa |
33293748 |
T |
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| Q |
226 |
atcaacattttttggccacaaaacttatcaaaatctattctaatttgggttttcttaattatgcatataaggtgtttgatcgatgtcctcacagagaagc |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
33293747 |
atcaacattttttggccacaaaacttatcaaaatctattctaatttgggttttcttaattatgcatataaggtgtttgatcaatgtcctcacagagaaac |
33293648 |
T |
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| Q |
326 |
catgctttgtaatgccatgatgggtggattccttaagaacatggaatataaagaggttcccaagttgtttaaaatgatgggtttgcgtgatattgaaata |
425 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33293647 |
catactttgtaatgccatgatgggtggattccttaagaacatggaatataaagaggttcccaagttgtttaaaatgatgggtttgcgtgatattgaacta |
33293548 |
T |
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| Q |
426 |
aatagttatacttgtgtttttggtctcaaggcttgtactgttctatttgatgatga |
481 |
Q |
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| T |
33293547 |
aatagttatacttgtgtttttggtctcaaggcttgtactgttctattggatgatga |
33293492 |
T |
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