View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0955_low_21 (Length: 214)
Name: NF0955_low_21
Description: NF0955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0955_low_21 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 32866670 - 32866803
Alignment:
| Q |
81 |
attattctcacagcggcggcaacattcacatgcttgtaatcgtaaaatctccacagccaaatccaaccgaatacatagaaacaaatttgaactgtacctt |
180 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32866670 |
attatactcacagcggcggcaacattcacatgcttgtaatcgtaaaatctccacagccaaatccaaccgaatacatagaaacaaatctgaactgtacctt |
32866769 |
T |
|
| Q |
181 |
nnnnnnngtgaacataaaatatacatattctcta |
214 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
32866770 |
aaaaaaagtgaacataaaatatacatattctcta |
32866803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University