View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0955_low_22 (Length: 213)
Name: NF0955_low_22
Description: NF0955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0955_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 43699138 - 43699003
Alignment:
| Q |
1 |
aatttgtgaaaggctataacaagtgttgttcaagggtttctgcatcgatttttctgaacaagttcgttagagtattcgttgatgttactaaaaaagcgaa |
100 |
Q |
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| T |
43699138 |
aatttgtgaaaggctataacaagtgttgttcaagggtttctgcatcgatttttctgaacaagttcattagagtattcgttgatgttactaaaaaagcgaa |
43699039 |
T |
|
| Q |
101 |
tttggatgttcatttggaatttgaatctgatgatgt |
136 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
43699038 |
tttggatgttcatttggaatttgaatctgatgatgt |
43699003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 39526518 - 39526654
Alignment:
| Q |
1 |
aatttgtgaaaggctataacaagtgttgttcaagggtttctgcatcgatttttctgaacaagttcgttagagtattcgttgatgttactaaaaaagcgaa |
100 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||| ||||||||||||| ||||||| || |
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| T |
39526518 |
aatttgtgaaaggctataacaagtgctgttctcgggtttctgcatcgatttttctgaacaagtttatcagagtgttcgttgatgttagataaaaagcaaa |
39526617 |
T |
|
| Q |
101 |
tttggatgttcatttggaatttgaatctgatgatgtc |
137 |
Q |
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| T |
39526618 |
tttggataatcattcggaatttgaatctgatgatgtc |
39526654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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