View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0955_low_3 (Length: 476)
Name: NF0955_low_3
Description: NF0955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0955_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 261 - 397
Target Start/End: Complemental strand, 9334138 - 9334007
Alignment:
| Q |
261 |
ttttcttttgttcttagaatattccaataaagatggtgagcatgaggtttggcaagttcgtgcaatcaccattctgttagaacccttgtggtaggcagta |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
9334138 |
ttttcttttgttcttagaatattccaataaagatagtgagcatgaggtttggcaagttcatacaatcaccattctgttagaac-----aggtaggcagta |
9334044 |
T |
|
| Q |
361 |
gagagaatagttttctctcaactgaggagcttaggct |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9334043 |
gagagaatagttttctctcaactgaggagcttaggct |
9334007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 397
Target Start/End: Complemental strand, 9328846 - 9328708
Alignment:
| Q |
241 |
cttattattactgtcattacttttcttttgttcttagaatattccaataaagatggtgagcatgaggtttggcaagttcgtgcaatcaccattctgttag |
340 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
9328846 |
cttattattactgtcatcactcttcttttgttcttagaata--------aagatagtgagcatgagatttggcaa----------tcaacattctgttag |
9328765 |
T |
|
| Q |
341 |
aacccttgtggtaggcagtagagagaatagttttctctcaactgaggagcttaggct |
397 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
9328764 |
aacacttgtggtaggcagtagagagaatagttttctctcaaaagaggatcttaggct |
9328708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 9333579 - 9333519
Alignment:
| Q |
394 |
ggcttgactcatgtgagagtgcaggttcttacattcactcttcatgatattattggacatg |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
9333579 |
ggcttgactcatgtgagagtgcaggttcttacattcactcttcatgattttgatggacatg |
9333519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 2172137 - 2172067
Alignment:
| Q |
105 |
ttaagctcctcttttgttagtacaactttcatgctaacactatttttccctttagtatcattaattgatga |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2172137 |
ttaagctcctcttttgttagtacaactttcatactaacactatttttccctttagtatcattaattgatga |
2172067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University