View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0955_low_4 (Length: 445)
Name: NF0955_low_4
Description: NF0955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0955_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 30 - 433
Target Start/End: Complemental strand, 31164221 - 31163818
Alignment:
| Q |
30 |
aaagcagtaaccaaaaacatgatgatgaatgttgcaataacctccacccagaaggcagagttacacccttggagtggttgagtcatcataacctctgatt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31164221 |
aaagcagtaaccaaaaacatgatgatgaatgttgcaataacctccacccagaaggcagagttacacccttggagtggttgagtcatcataacctctgatt |
31164122 |
T |
|
| Q |
130 |
ttatgccatagacaaggctaccaatatatgttgccatcaaagaaccaattgtttgtgctattatgtaaattggaaccttgaaccatggaaagtgaccaat |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31164121 |
ttatgccatagacaaggctaccaatatatgttgccatcaaagaaccaattgtttgtgctattatataaattggaaccttgaaccatggaaagtgaccaat |
31164022 |
T |
|
| Q |
230 |
tgttgcaaaggctattgtgatagctgggttaacatgtgcacaagaaattggacctatagagaaaattatcacaaccacagttaatcctgctgtagctgca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31164021 |
tgttgcaaaggctattgtgatagctgggttaacatgtgcacaagaaattggacctatagagaaaattatcacaaccacagttaatcctgctgtagctgca |
31163922 |
T |
|
| Q |
330 |
tattccaaaaggccaactgcaccattttggtgttgtgtgcttgcaatgattccacacacacaaaacatcaatataaaagtacccaccacctctgccatta |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31163921 |
tattccaaaaggccaactgcaccattttggtgttgtgtgcttgcaatgattccacatacacaaaacatcaatataaaagtacccaccacctctgccatta |
31163822 |
T |
|
| Q |
430 |
ccta |
433 |
Q |
| |
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|||| |
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| T |
31163821 |
ccta |
31163818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 326 - 433
Target Start/End: Complemental strand, 11157404 - 11157297
Alignment:
| Q |
326 |
tgcatattccaaaaggccaactgcaccattttggtgttgtgtgcttgcaatgattccacacacacaaaacatcaatataaaagtacccaccacctctgcc |
425 |
Q |
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|||||| |||||||||||||||||||||||||| |||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
11157404 |
tgcatactccaaaaggccaactgcaccattttgatgttgtatgcttggaatgattccacatacacaaaacatcaatataaaagtacccaccacctccgcc |
11157305 |
T |
|
| Q |
426 |
attaccta |
433 |
Q |
| |
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|||||||| |
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| T |
11157304 |
attaccta |
11157297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 11157729 - 11157647
Alignment:
| Q |
40 |
ccaaaaacatgatgatgaatgttgcaataacctccacccagaaggcagagttacacccttggagtggttgagtcatcataacc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| |
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| T |
11157729 |
ccaaaaacatgatgatgaatgttgcaataacctccacccagaagacagggttacacccttggagtggctgagtcatcataacc |
11157647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 11157650 - 11157615
Alignment:
| Q |
172 |
aaccaattgtttgtgctattatgtaaattggaacct |
207 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| |
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| T |
11157650 |
aaccaattgtttgtgctattatgtaaattagaacct |
11157615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 36573396 - 36573526
Alignment:
| Q |
36 |
gtaaccaaaaacatgatgatgaatgttgcaataacctccacccagaaggcagagttacacccttggagtggttgagtcatcataacctctgattttatgc |
135 |
Q |
| |
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|||||||||||| |||||||||| ||||||| ||||||||||| ||||| ||| ||||||||| | ||| |||||||||||||||||| |||| |||| |
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| T |
36573396 |
gtaaccaaaaacgcgatgatgaatattgcaattacctccacccataaggctgagctacacccttcaaatggatgagtcatcataacctctaatttaatgc |
36573495 |
T |
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| Q |
136 |
catagacaaggctaccaatatatgttgccat |
166 |
Q |
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|||||||||| |||| ||||||||||||||| |
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| T |
36573496 |
catagacaagactactaatatatgttgccat |
36573526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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