View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0955_low_6 (Length: 382)

Name: NF0955_low_6
Description: NF0955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0955_low_6
NF0955_low_6
[»] chr4 (3 HSPs)
chr4 (144-235)||(83724-83815)
chr4 (1-81)||(83580-83660)
chr4 (232-287)||(84150-84205)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 83724 - 83815
Alignment:
Q  144 gattgtaaacatagttaacatttcaaggatgatattaaaggtatccagcatacttcattcaaatttttgttcttcctctattcatcctttgt 235  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  83724 gattgtgaacatagttaacatttcaaggatgatattaaaggtatccagcatacttcattcaaattttagttcttcctctattcatcctttgt 83815  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 83580 - 83660
Alignment:
Q  1 tcagcttggccatgcaccaaatacagccgagacacaaacacatcttagacacacagcctcaacaatagcttaacacctaac 81  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  83580 tcagcttggccatgcaacaaatacagccgagacacaaacacatcttagacacacagcctcaacaatagcttaacacctaac 83660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 84150 - 84205
Alignment:
Q  232 ttgtgccagttagaaaaagggaaaacatacatggggggatgtttcactcatcatat 287  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  84150 ttgtgcaagttagaaaaagggaaaacatacatggggggatgtttcactcatcatat 84205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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