View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0956_high_1 (Length: 809)
Name: NF0956_high_1
Description: NF0956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0956_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 650; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 13 - 780
Target Start/End: Original strand, 10569192 - 10569944
Alignment:
| Q |
13 |
aatatcaaacacactcaagcaagaaaaaatgtataacttgaaagaatagataatgttaaatgaccttaaaggtagaccttcctatatagaaaagtaacag |
112 |
Q |
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| T |
10569192 |
aatatcaaacacactcaagcaagaaaagatgtataacttgaaagaatagataatgttaaatgaccttaaaggtagaccttcctatatagaaaagtaacag |
10569291 |
T |
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| Q |
113 |
tagcatcaatctcagtttaaaacaaaaaattacaaaataattccttaataaattcccaataactcatactttcataagcttatagtatcgaaatccttat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10569292 |
tagcatcaatctcagtttaaaacaaaaaattacaaaataattccttaataaattcccaataactcatactttcataagcttatagtatcgaaatcctttt |
10569391 |
T |
|
| Q |
213 |
aaataaaactatgatgatggtaacacttnnnnnnngctaaatctttaaaataacaatcatcttctttcaacaagtagcgatggttgattgctctgaaacg |
312 |
Q |
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| T |
10569392 |
aaataaacctatgatgatggtaacacttaaaaaaagctaaatctttaaaataacaatcatcttctttcaacaagtagcgatggttgattgctctgaaacg |
10569491 |
T |
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| Q |
313 |
catatcatgttaggtgcaacgacaacagcaagaacgtgatcctgtcaaacacaattacaacgaacagcgtcaactatatgctttctatgcaagacaggag |
412 |
Q |
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| T |
10569492 |
catatcatgttaggtgcaacg---------------tgatcctgtcaaacacaatgacaacgaacagcgtcaactatatgttttctatgcaagacaggag |
10569576 |
T |
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| Q |
413 |
atagattacacaaggatatggtaagaaaatgtcctgaattctctttttaactcattcttgtcatataaaa-accagtatagcaagataaaaaatgcagga |
511 |
Q |
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| T |
10569577 |
atagattacacaaggatatggtaagaacatgtcctgaattctctttttaactcattcttgtcatataaaaaaccagtatagcaagataaaaaatgcagga |
10569676 |
T |
|
| Q |
512 |
aattaatatgtggaaaatcaaaacgtaatacataaccaacaactaaaaataaaaacgtgatttggaaataatccttgataccatatattaatcaatataa |
611 |
Q |
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| T |
10569677 |
aattaatatgtggaaaatcaaaacgtaatacataaccaacaactaaaaataaaaacgtgatttggaaataatccttgataccatatattaatcaatataa |
10569776 |
T |
|
| Q |
612 |
tataaaggttttcaaaaatgcaatcataatagtagtacactacaacaaactttcagaccaactcattcacggtgggcgtttaggatgaatccgtatatgt |
711 |
Q |
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| T |
10569777 |
tataaaggttttcaaaaatgcaatcataatagtagtacactacaacaaactttcagaccaactcattcacggt-ggcgtttaggatgaatccgtatatgt |
10569875 |
T |
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| Q |
712 |
attggtccatactgggccaaaatttctagccattatagatattcactgcactgaatcttatttccaccc |
780 |
Q |
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| T |
10569876 |
attggtccatactgggccaaaatttctagccattatagatattcaccacactgaatcttatttccaccc |
10569944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 124 - 612
Target Start/End: Original strand, 10551768 - 10552279
Alignment:
| Q |
124 |
tcagtttaaaacaaaaaa-ttacaaaataattccttaataaattcccaataactcatactttcataagcttatagtatcgaaatccttataaataaaact |
222 |
Q |
| |
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| T |
10551768 |
tcagtttaaaacaaaaaaattacaaaataattccttaataa-ttcccaatacctcatactttcataagctaatagtatcgaaatccttaaaaataaaaca |
10551866 |
T |
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| Q |
223 |
atgatgatggtaacacttnnnnnnngctaaatct----ttaaaataacaatcatcttctttcaacaagtagcgatggttgattgctctgaaacgcatatc |
318 |
Q |
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| T |
10551867 |
atgatgatggtaacacttaaaaaaagcaaaatatatatttaaaataacaatcatcttctttcaacaagtagcgatggttgattgctctggaacacatatc |
10551966 |
T |
|
| Q |
319 |
atgttaggtgcaacgacaacagcaagaacgtgatcctgtcaaacacaattacaacgaacagcgtcaactatatgctttctatgcaagacaggagatagat |
418 |
Q |
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| T |
10551967 |
atgttaggtgcaacgacaacagcaagaacgtgatcctgtcaaacacaatcacaacgaacaccgtcaactatatgttttctatgcaagacaggagatatat |
10552066 |
T |
|
| Q |
419 |
tacacaaggatatggtaagaaaatgtcctgaattctctttttaactcattcttg-------------------tcatat-aaaaaccagtatagcaagat |
498 |
Q |
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||||||||||||||||||||| ||||||| |||||| |||| |||||||||||| |||||| ||||| |||| |||||| | |
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| T |
10552067 |
tacacaaggatatggtaagaacatgtcctaaattcttttttcaactcattcttgtgtttcgtatacaaacctatcatataaaaaagcagtgtagcaaaac |
10552166 |
T |
|
| Q |
499 |
aaaaaatgcaggaaattaatatgtggaaaatcaaaacgtaatacataaccaacaactaaaaataaaaacgtgatttggaaataatccttgataccatata |
598 |
Q |
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| T |
10552167 |
acaaaatgcaacaaattagtatgt-gaaaatcaaaatgtaatatagaacccacaattgaaaatcaaaacgtgattttgaaataatcctttataccatata |
10552265 |
T |
|
| Q |
599 |
ttaatcaatataat |
612 |
Q |
| |
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| T |
10552266 |
ttaatcaatataat |
10552279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 639 - 681
Target Start/End: Original strand, 10552317 - 10552359
Alignment:
| Q |
639 |
aatagtagtacactacaacaaactttcagaccaactcattcac |
681 |
Q |
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| T |
10552317 |
aatagtagtacactacaacaaggtttcagaccaactcattcac |
10552359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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