View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0956_high_10 (Length: 275)
Name: NF0956_high_10
Description: NF0956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0956_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 27844772 - 27844702
Alignment:
| Q |
1 |
tcttaaaaattctcactttaaaattttatttagtctaatggattaattattagaggtggaaattgagttca |
71 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27844772 |
tcttcaaaattctcactttaaaattttatttagtcctatggattaattattagaggtggaaattgagttca |
27844702 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 27844607 - 27844560
Alignment:
| Q |
171 |
tatttaccaaacaagatatgccgcaaatagaaagatacaaacatcatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27844607 |
tatttaccaaacaagatatgccgcaaatagaaagatacaaacgtcatc |
27844560 |
T |
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