View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0956_high_5 (Length: 405)
Name: NF0956_high_5
Description: NF0956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0956_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 30 - 405
Target Start/End: Original strand, 42835698 - 42836075
Alignment:
| Q |
30 |
aaaccatgatcatagaaaattgtctccatgtatcatttaaaaaattccga--caaacagaacatggagcacagtctcctcactttactagttcacatgat |
127 |
Q |
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| T |
42835698 |
aaaccatgatcatagaaaattgtctccatgtatcatttaaaaaattcagagacaaacagaacatggagcacagtctcctcactttactagttcacatgat |
42835797 |
T |
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| Q |
128 |
tccccattgctacgcattctatttacattgagtagtcttacaatcaggatgaaggtttgaaaattaaattgttggtttgtacttagaaacttacattctt |
227 |
Q |
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| T |
42835798 |
tccccattgctacgcattctatttatgttgagtagtcttacaatcaggatgaaggtttgaaaattaaagtgttggtttgtacttagaaacttacattatt |
42835897 |
T |
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| Q |
228 |
attcccatacacattaaaacagatacacatttgagttgtgtgcaatgggcggtgcagtcagtctcatctgaactatccgattgtaagactagatagatta |
327 |
Q |
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| T |
42835898 |
attcccatacacattaaaacagatacacatttgagttgtgtgcaatgggcggtgcagtcagtctcatctgaactatccgattgtaagactagatagatta |
42835997 |
T |
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| Q |
328 |
aggttcaagattaactaatcatatcctactggttcatcaaattctagattgaaacaggatatatgatagcttatcata |
405 |
Q |
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| T |
42835998 |
aggttcaagattaactaatcatatcctactggttcatcaaattctagattgaaacaggatatatgatagcttatcata |
42836075 |
T |
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