View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0956_high_7 (Length: 325)
Name: NF0956_high_7
Description: NF0956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0956_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 4672805 - 4673086
Alignment:
| Q |
16 |
atctaaacaacataacatgtataaatcatcaaactcaagcatgcatgcattcaacacatactttgaattaaagacatgtcttctgataaatgataattac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4672805 |
atctaaacaacataacatgtataaatcatcaaactcaagcatgcatgcattcaacacatactttgaattaaagacatgtcttctgataaatgataattac |
4672904 |
T |
|
| Q |
116 |
tcaacgatattaatactaatacttaattaataaacactaaacagcaaa-ttataagagatttgacagaaccaaacaaacctttccagcatcttgccatgt |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4672905 |
tcaacaatattaatactaatacttaattaataaacactaaacagcaaatttataagagattggacagaaccaaacaaacctttccagcatcttgccatgt |
4673004 |
T |
|
| Q |
215 |
aacaccagtaagccactcaacagtaagagcaccaagagtagcaagcatagcccacctaccatgaatcaactcacattctcta |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4673005 |
aacaccagtaagccactcaacagtaagagcaccaagagtagcaagcatagcccacctaccatgaatcaactcacattctcta |
4673086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University