View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0956_low_12 (Length: 397)
Name: NF0956_low_12
Description: NF0956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0956_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 35565531 - 35565846
Alignment:
| Q |
16 |
ataatgacaaccaaactaaatagtctaagcaacaacatattcaacatagaacaaatctaaaacttacgtgtatagagcaagaaaataaagagagaagagg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35565531 |
ataatgacaaccaaactaaatagtctaagcaacaacatattcaacatagaacaaatctaaaacttacgtgtatagagcaagaagataaagagagaagagg |
35565630 |
T |
|
| Q |
116 |
aagaaacgtaccaaaattgtttattctttcaaggtgtttacaatatgt--cttaaccctagatcctcaaccaaaagccatcaacataaaagcaagtactc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35565631 |
aagaaacgtaccaaaattgtttattctttcaaggtgtttacaatatgtttcttaaccctagatcctcaaccaaaagccatcaacataaaagcaagtattc |
35565730 |
T |
|
| Q |
214 |
aacacaagagccataatcttctctttttgttccctcttcctagtctcttgctcttgaaccctagtcactctcccaaaagacaccaaccattagcttttaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35565731 |
aacacaagagccataatcttctctttttgttccctcttcctagtctcttgctcttgaaccctagtcactctcccaaaagacaccaaccattagcttttaa |
35565830 |
T |
|
| Q |
314 |
gtttcttaacgatcct |
329 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
35565831 |
gtttcttaaggatcct |
35565846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 16595736 - 16595684
Alignment:
| Q |
22 |
acaaccaaactaaatagtctaagcaacaacatattcaacatagaacaaatcta |
74 |
Q |
| |
|
|||||||||||||| | || || |||||||| | ||||||||||||||||||| |
|
|
| T |
16595736 |
acaaccaaactaaacaatccaaacaacaacaaactcaacatagaacaaatcta |
16595684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University