View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0956_low_13 (Length: 349)
Name: NF0956_low_13
Description: NF0956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0956_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 100 - 338
Target Start/End: Original strand, 26790813 - 26791051
Alignment:
| Q |
100 |
atatattaaaataaaaccaatgtaacatcatattttggtaacataacaacaagtaaagagtttagaaattggattaagaaaatggaacctgtaaattgga |
199 |
Q |
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| T |
26790813 |
atatattaaaataaaaccaatgtaacatcatattttggtaacataacaacaagtaaagagtttagaaattggattaagaaaatggaacctgtaaattgga |
26790912 |
T |
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| Q |
200 |
gagatataggaatttccatcctttgagactagcacgtacagccaaatccatgtcttcgacggtggttctatctttccacccaccagcttcattcaacgcc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
26790913 |
gagatataggaatttccatcctttgagactagcacgtacagccaaatccatgtcttcgacggtggttctatctttccatccacccgcttcattcaacgcc |
26791012 |
T |
|
| Q |
300 |
aaaattctccatacaccagcagtccctatgtcatttcat |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
26791013 |
gaaattctccatacaccagcagtccctatgtcatttcat |
26791051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 172 - 333
Target Start/End: Original strand, 26831263 - 26831424
Alignment:
| Q |
172 |
attaagaaaatggaacctgtaaattggagagatataggaatttccatcctttgagactagcacgtacagccaaatccatgtcttcgacggtggttctatc |
271 |
Q |
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||||||||||| ||||||| |||| |||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26831263 |
attaagaaaatcgaacctgcaaatcggagaggtataagaatttccatcctttgagactggcacgtacagccaaatccatgtcttcgacggtggttctatc |
26831362 |
T |
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| Q |
272 |
tttccacccaccagcttcattcaacgccaaaattctccatacaccagcagtccctatgtcat |
333 |
Q |
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| T |
26831363 |
tttccacccaccagcttcattcaacgccgaaattctccatacacccgcagtccctgtgtcat |
26831424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 167 - 338
Target Start/End: Original strand, 26784554 - 26784725
Alignment:
| Q |
167 |
attggattaagaaaatggaacctgtaaattggagagatataggaatttccatcctttgagactagcacgtacagccaaatccatgtcttcgacggtggtt |
266 |
Q |
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|||| |||||| |||||||||||||| ||||||||| |||| |||||||||||||| |||||| |||||||| | | |||||| ||||| || ||||| |
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| T |
26784554 |
attgaattaagtaaatggaacctgtatattggagaggtataagaatttccatccttcgagacttgcacgtactgatagatccatatcttcaactgtggtc |
26784653 |
T |
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| Q |
267 |
ctatctttccacccaccagcttcattcaacgccaaaattctccatacaccagcagtccctatgtcatttcat |
338 |
Q |
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| T |
26784654 |
ctatctttccacccaccagcttcattcaacgccgaaattctccacacacccgcagtccctatgtcatttcat |
26784725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 328
Target Start/End: Original strand, 26817602 - 26817748
Alignment:
| Q |
182 |
tggaacctgtaaattggagagatataggaatttccatcctttgagactagcacgtacagccaaatccatgtcttcgacggtggttctatctttccaccca |
281 |
Q |
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|||||||| |||||| | || |||| |||||||||||||| ||||||||||||||||||| ||||| ||||| || ||||| ||||||||||||||| |
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| T |
26817602 |
tggaacctctaaattacaaaggtataagaatttccatccttccagactagcacgtacagccaggtccatatcttcaactgtggtcctatctttccaccca |
26817701 |
T |
|
| Q |
282 |
ccagcttcattcaacgccaaaattctccatacaccagcagtccctat |
328 |
Q |
| |
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|||||||||||||| || |||||||||| ||||||||||||||||| |
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| T |
26817702 |
ccagcttcattcaatgctgaaattctccacacaccagcagtccctat |
26817748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 41919835 - 41919711
Alignment:
| Q |
204 |
tataggaatttccatcctttgagactagcacgtacagccaaatccatgtcttcgacggtggttctatctttccacccaccagcttcattcaacgccaaaa |
303 |
Q |
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|||| ||| ||||| |||||||||||||| | |||||||| ||||| ||||| || ||||| ||||| ||||| |||||||| || |||| |||| ||| |
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| T |
41919835 |
tataagaacttccaccctttgagactagctctaacagccaagtccatatcttcaactgtggtcctatccttccatccaccagcctcgttcagcgccgaaa |
41919736 |
T |
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| Q |
304 |
ttctccatacaccagcagtccctat |
328 |
Q |
| |
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||||||| || || ||||||||||| |
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| T |
41919735 |
ttctccacactcccgcagtccctat |
41919711 |
T |
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