View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0956_low_14 (Length: 341)

Name: NF0956_low_14
Description: NF0956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0956_low_14
NF0956_low_14
[»] chr5 (12 HSPs)
chr5 (87-277)||(16994623-16994817)
chr5 (87-277)||(17017858-17018052)
chr5 (96-277)||(17036698-17036878)
chr5 (96-277)||(17048388-17048569)
chr5 (96-277)||(17042524-17042703)
chr5 (96-268)||(17002654-17002829)
chr5 (96-234)||(17025049-17025188)
chr5 (96-217)||(17031984-17032108)
chr5 (87-124)||(17082382-17082419)
chr5 (87-124)||(17097258-17097295)
chr5 (185-227)||(17017213-17017255)
chr5 (87-124)||(17079588-17079625)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 87 - 277
Target Start/End: Original strand, 16994623 - 16994817
Alignment:
Q  87 gattcaactccaagagttcccccaaacacttcattgaaaaaatggctatcttttctaatggactttagaccaaatag----atattctcatgcatgaagc 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  16994623 gattcaactccaagagttcccccaaacacttcattgaaaaaatggctatcttttctaatggactttagaccaaatagatagatattctcatgcatgaagc 16994722  T
Q  183 gttcaaaggaactctaagagacaatcaacaaaaagctaataagctagatctgttggactagtttgctgcgttggctaaataatgcatagtataat 277  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16994723 gttcaaaggaactctaagagacaatcaacataaagctaataagctagatctgttagactagtttgctgcgttggctaaataatgcatagtataat 16994817  T

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Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 87 - 277
Target Start/End: Original strand, 17017858 - 17018052
Alignment:
Q  87 gattcaactccaagagttcccccaaacacttcattgaaaaaatggctatcttttctaatggactttagaccaaatag----atattctcatgcatgaagc 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  17017858 gattcaactccaagagttcccccaaacacttcattgaaaaaatggctatcttttctaatggactttagaccaaatagatagatattctcatgcatgaagc 17017957  T
Q  183 gttcaaaggaactctaagagacaatcaacaaaaagctaataagctagatctgttggactagtttgctgcgttggctaaataatgcatagtataat 277  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17017958 gttcaaaggaactctaagagacaatcaacataaagctaataagctagatctgttagactagtttgctgcgttggctaaataatgcatagtataat 17018052  T

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Target: chr5; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 96 - 277
Target Start/End: Original strand, 17036698 - 17036878
Alignment:
Q  96 ccaagagttcccccaaacacttcattga--aaaaatggctatcttttctaatggactttagaccaaatagatattctcatgcatgaagcgttcaaaggaa 193  Q
    ||||||||||||||||||||||||||||  || ||   |||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||    
T  17036698 ccaagagttcccccaaacacttcattgatgaagaa---ctatcttttctaatggatattagaccaaatacatattctcatgcatgaagcgttcaaaggaa 17036794  T
Q  194 ctctaagagacaatcaacaaaaagctaataagctagatctgttggactagtttgctgcgttggctaaataatgcatagtataat 277  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17036795 ctctaagaaacaatcaacaaaaagctaataagctagatctgttagactagtttgctgcgttggctaaataatgcatagtataat 17036878  T

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Target: chr5; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 96 - 277
Target Start/End: Original strand, 17048388 - 17048569
Alignment:
Q  96 ccaagagttcccccaaacacttcattgaaaaaatggctatcttttctaatggactttagaccaaatagatattctcatgcatgaagcgttcaaaggaact 195  Q
    ||||||||||||||||||||||||| ||| ||| | |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  17048388 ccaagagttcccccaaacacttcatagaagaaaagactatcttttctaatggatattagaccaaatagatattctcatgcatgaagcgttcaaaggaact 17048487  T
Q  196 ctaagagacaatcaacaaaaagctaataagctagatctgttggactagtttgctgcgttggctaaataatgcatagtataat 277  Q
    |||||||||||||||||||||||||||||||| | | || | ||||||||| ||||||||||||||| ||||||||||||||    
T  17048488 ctaagagacaatcaacaaaaagctaataagctggttttgatagactagttttctgcgttggctaaatgatgcatagtataat 17048569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 96 - 277
Target Start/End: Original strand, 17042524 - 17042703
Alignment:
Q  96 ccaagagttcccccaaacacttcattgaaaaaatggctatcttttctaatggactttagaccaaatagatattctcatgcatgaagcgttcaaaggaact 195  Q
    |||||||||||||||||||||||||| || ||    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17042524 ccaagagttcccccaaacacttcatttaagaagaa-ctat-ttttctaatggattttagaccaaatagatattctcatgcatgaagcgttcaaaggaact 17042621  T
Q  196 ctaagagacaatcaacaaaaagctaataagctagatctgttggactagtttgctgcgttggctaaataatgcatagtataat 277  Q
    |||||||||||||||||||||||||||||||| |||||| | |||| ||||  |||||||||||||||||||||||||||||    
T  17042622 ctaagagacaatcaacaaaaagctaataagctggatctgatagacttgttttatgcgttggctaaataatgcatagtataat 17042703  T

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Target: chr5; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 96 - 268
Target Start/End: Original strand, 17002654 - 17002829
Alignment:
Q  96 ccaagagttcccccaaacacttcattgaaaaaatggctatcttttctaatggactttagaccaaatag----atattctcatgcatgaagcgttcaaagg 191  Q
    |||||||||||||||||||||||||| || ||    ||||||||||||||||| ||||||||||||||    ||||||||||||||||||||||||||||    
T  17002654 ccaagagttcccccaaacacttcatttaagaagaa-ctatcttttctaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaagg 17002752  T
Q  192 aactctaagagacaatcaacaaaaagctaataagctagatctgttggactagtttgctgcgttggctaaataatgca 268  Q
    ||||||||||||||||||||| ||||||||| ||||||||||  |  ||||| ||||||| ||| ||||||||||||    
T  17002753 aactctaagagacaatcaacataaagctaatcagctagatctacttcactagcttgctgccttgactaaataatgca 17002829  T

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Target: chr5; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 17025049 - 17025188
Alignment:
Q  96 ccaagagttcccccaaacacttcattgaaaaaatggctatcttttctaatggactttagaccaaatagatatt-ctcatgcatgaagcgttcaaaggaac 194  Q
    ||||||||||||||||||||||||| ||| |||   ||||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||||||    
T  17025049 ccaagagttcccccaaacacttcatagaagaaaatactatcttttctaatggattttaaaccaaagagatatttctcatgcatgaagcgttcaaaggaac 17025148  T
Q  195 tctaagagacaatcaacaaaaagctaataagctagatctg 234  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  17025149 tctaagagacaatcaacaaaaagcttatcagctagatctg 17025188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 17031984 - 17032108
Alignment:
Q  96 ccaagagttcccccaaacacttcattgaaaaaatggctatcttttctaatggactttagaccaaatag----atattctcatgcatgaagcgttcaaagg 191  Q
    |||||||||||||||||||||||||| || ||    |||||| | |||||||| |||| |||||||||    ||||||||||||||||||||||||||||    
T  17031984 ccaagagttcccccaaacacttcatttaagaagaa-ctatctatcctaatggattttaaaccaaatagatagatattctcatgcatgaagcgttcaaagg 17032082  T
Q  192 aactctaagagacaatcaacaaaaag 217  Q
    ||||||||||||||||||||||||||    
T  17032083 aactctaagagacaatcaacaaaaag 17032108  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 17082382 - 17082419
Alignment:
Q  87 gattcaactccaagagttcccccaaacacttcattgaa 124  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  17082382 gattcaattccaagagttcccccaaacacttcattgaa 17082419  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 17097258 - 17097295
Alignment:
Q  87 gattcaactccaagagttcccccaaacacttcattgaa 124  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  17097258 gattcaattccaagagttcccccaaacacttcattgaa 17097295  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 17017213 - 17017255
Alignment:
Q  185 tcaaaggaactctaagagacaatcaacaaaaagctaataagct 227  Q
    ||||||||||||||||||||||| || ||||||||||| ||||    
T  17017213 tcaaaggaactctaagagacaatgaataaaaagctaatcagct 17017255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 17079588 - 17079625
Alignment:
Q  87 gattcaactccaagagttcccccaaacacttcattgaa 124  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  17079588 gattcaattccaagagttcccccaaatacttcattgaa 17079625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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