View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0956_low_17 (Length: 317)

Name: NF0956_low_17
Description: NF0956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0956_low_17
NF0956_low_17
[»] chr8 (17 HSPs)
chr8 (11-108)||(38090-38187)
chr8 (192-263)||(38256-38327)
chr8 (11-108)||(43203190-43203288)
chr8 (12-108)||(39516410-39516507)
chr8 (16-108)||(24191490-24191582)
chr8 (11-108)||(22621047-22621145)
chr8 (29-95)||(42793826-42793892)
chr8 (11-88)||(7770102-7770180)
chr8 (11-83)||(7777779-7777852)
chr8 (59-108)||(24068472-24068521)
chr8 (41-108)||(31844507-31844574)
chr8 (12-75)||(36757166-36757230)
chr8 (11-83)||(7795871-7795945)
chr8 (42-95)||(7951964-7952017)
chr8 (42-95)||(36939959-36940012)
chr8 (11-83)||(45395953-45396026)
chr8 (42-94)||(24306049-24306101)
[»] chr4 (19 HSPs)
chr4 (11-108)||(46795939-46796037)
chr4 (17-108)||(36846470-36846561)
chr4 (2-95)||(38554025-38554119)
chr4 (11-108)||(47667283-47667381)
chr4 (192-263)||(38554208-38554280)
chr4 (2-108)||(3528286-3528393)
chr4 (2-95)||(29665500-29665594)
chr4 (41-108)||(41348375-41348442)
chr4 (16-108)||(44499895-44499987)
chr4 (2-94)||(56001196-56001288)
chr4 (29-108)||(26631129-26631208)
chr4 (204-263)||(46795787-46795846)
chr4 (193-263)||(307571-307641)
chr4 (15-108)||(52137538-52137631)
chr4 (41-108)||(307713-307785)
chr4 (9-92)||(35348903-35348987)
chr4 (41-108)||(26376446-26376513)
chr4 (41-108)||(49895180-49895247)
chr4 (29-92)||(39056552-39056615)
[»] chr3 (10 HSPs)
chr3 (2-108)||(48253029-48253136)
chr3 (2-108)||(47766864-47766971)
chr3 (11-94)||(7271518-7271602)
chr3 (2-108)||(53809406-53809513)
chr3 (29-104)||(10301732-10301807)
chr3 (16-104)||(10339906-10339995)
chr3 (29-108)||(14744190-14744268)
chr3 (41-88)||(48084671-48084718)
chr3 (41-95)||(54750369-54750423)
chr3 (11-83)||(17345415-17345488)
[»] chr7 (14 HSPs)
chr7 (16-108)||(17288155-17288248)
chr7 (11-108)||(28326303-28326401)
chr7 (29-108)||(26146617-26146696)
chr7 (29-108)||(41515120-41515199)
chr7 (11-108)||(43442673-43442771)
chr7 (192-263)||(17288014-17288085)
chr7 (12-108)||(45721679-45721776)
chr7 (9-92)||(10955951-10956035)
chr7 (29-79)||(35296757-35296807)
chr7 (21-104)||(3330810-3330893)
chr7 (204-263)||(28326154-28326213)
chr7 (43-108)||(30333415-30333480)
chr7 (17-108)||(32653577-32653668)
chr7 (227-263)||(41515305-41515341)
[»] chr5 (10 HSPs)
chr5 (2-108)||(8188113-8188220)
chr5 (192-263)||(224352-224424)
chr5 (2-95)||(224516-224610)
chr5 (204-263)||(5976052-5976111)
chr5 (16-106)||(9219289-9219380)
chr5 (29-95)||(10736861-10736927)
chr5 (29-90)||(5975880-5975941)
chr5 (42-106)||(4124897-4124961)
chr5 (29-74)||(13519604-13519649)
chr5 (44-108)||(1103878-1103942)
[»] chr1 (9 HSPs)
chr1 (12-108)||(26803129-26803226)
chr1 (11-108)||(40110565-40110663)
chr1 (29-108)||(40533514-40533593)
chr1 (44-87)||(24516473-24516516)
chr1 (24-108)||(6048039-6048123)
chr1 (57-108)||(48528806-48528857)
chr1 (11-85)||(12667208-12667283)
chr1 (11-83)||(14765033-14765105)
chr1 (16-79)||(51446782-51446846)
[»] chr6 (6 HSPs)
chr6 (11-108)||(18242220-18242318)
chr6 (29-92)||(138132-138195)
chr6 (29-92)||(146153-146216)
chr6 (11-83)||(18773759-18773832)
chr6 (29-108)||(30232817-30232895)
chr6 (32-85)||(11968400-11968453)
[»] chr2 (5 HSPs)
chr2 (29-95)||(1147876-1147942)
chr2 (29-96)||(19397657-19397724)
chr2 (9-83)||(4830613-4830688)
chr2 (41-79)||(4919966-4920004)
chr2 (44-104)||(25569908-25569968)
[»] scaffold0219 (1 HSPs)
scaffold0219 (16-108)||(7007-7100)
[»] scaffold0084 (1 HSPs)
scaffold0084 (11-83)||(11811-11884)


Alignment Details
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 38090 - 38187
Alignment:
Q  11 gtcctctccgttagtttgtaatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    ||||||||||||||||| |||||||| || |||||||||||||| ||||||||| |||||||||||||||||||||| |||||||  |||||||||||    
T  38090 gtcctctccgttagtttttaatgtctaaattttttgatatgattttaaccatttaattgcatgtccattgtatttaacagtgaaccgtcagcacctaa 38187  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 38256 - 38327
Alignment:
Q  192 acatcagcgtcgtcaatctttatacaaaaccagaaaaatttcagaaatcatcaacaacaatcaataataaaa 263  Q
    |||||||| || |||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||    
T  38256 acatcagcttcatcaatctttatacaaaacccaaaaaattccagaaatcatcaacaacaatcaataataaaa 38327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 43203288 - 43203190
Alignment:
Q  11 gtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||| |||||||||||| | ||||||| || |||||||| | ||| ||| |||||||||||||||||||||||||||| |||||||| |||||||||||    
T  43203288 gtcccctccgttagttttttaatgtctaaattttttgatttaattttaaacatttgattgcatgtccattgtatttaaaagtgaactatcagcacctaa 43203190  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 39516507 - 39516410
Alignment:
Q  12 tcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||||||||||| | ||||||| || ||||| || ||||| |||||||||||||||||||||||||||| |||||||||||  |||||| ||||    
T  39516507 tcctctccgttagttttttaatgtctaaattttttcatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcagcatctaa 39516410  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 24191490 - 24191582
Alignment:
Q  16 ctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||||||||| ||||||| || |||||||| ||||| ||||| |||||||||||||||||||||| | |||||||||  |||||||||||    
T  24191490 ctccgttagtttgttaatgtctaaattttttgatttgattttaaccgtttgattgcatgtccattgtatct-atagtgaaccgtcagcacctaa 24191582  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 22621145 - 22621047
Alignment:
Q  11 gtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||| |||||||| | ||||| | || || ||||||||||| ||| ||||||||||||||||||||||||||||  |||||| |||| |||||||    
T  22621145 gtcctctctgttagttttttaatgtataaaattcttgatatgattttaatcatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaa 22621047  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 42793826 - 42793892
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaac 95  Q
    |||||||| ||  ||||||||||||| |||||||| |||||||||||||||||| ||||||||||||    
T  42793826 taatgtctaaaacttttgatatgattttaaccattggattgcatgtccattgtaattaatagtgaac 42793892  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 7770102 - 7770180
Alignment:
Q  11 gtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaat 88  Q
    ||||||||||||||||| | ||||||| || ||||| || ||||| |||||||||||||| ||||||||||||| ||||    
T  7770102 gtcctctccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgtatgtccattgtatctaat 7770180  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 7777779 - 7777852
Alignment:
Q  11 gtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtat 83  Q
    ||||||||||||||||| | ||||||| || ||||| || ||||| |||||||||||||| |||||||||||||    
T  7777779 gtcctctccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgtatgtccattgtat 7777852  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 24068472 - 24068521
Alignment:
Q  59 ccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  24068472 ccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaa 24068521  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 31844507 - 31844574
Alignment:
Q  41 tttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||| ||||| |||||| ||||||||||||| |||||| |||| |||||||  |||||||||||    
T  31844507 tttttgatttgattttaaccacttgattgcatgtctattgtaattaacagtgaaccatcagcacctaa 31844574  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 36757230 - 36757166
Alignment:
Q  12 tcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtc 75  Q
    |||||||| ||||||| | ||||||| || |||||||||||||| ||||||||| ||||||||||    
T  36757230 tcctctccattagttttttaatgtctaaattttttgatatgattttaaccatttaattgcatgtc 36757166  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 7795871 - 7795945
Alignment:
Q  11 gtcctctccgttagtttgt-aatgtcttaactttttg-atatgattataaccatttgattgcatgtccattgtat 83  Q
    ||||||||||||||||| | ||||||| || |||||  || ||||| |||||||||||||| |||||||||||||    
T  7795871 gtcctctccgttagttttttaatgtctaaattttttttatgtgattttaaccatttgattgtatgtccattgtat 7795945  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 7952017 - 7951964
Alignment:
Q  42 ttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaac 95  Q
    |||||| |||||| |||| |||||||| || ||||||||||||| |||||||||    
T  7952017 ttttgagatgattttaactatttgattacaagtccattgtatttgatagtgaac 7951964  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 36940012 - 36939959
Alignment:
Q  42 ttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaac 95  Q
    |||||||||| ||  ||||||| ||||||| ||||||||||| |||||||||||    
T  36940012 ttttgatatggtttcaaccattcgattgcaggtccattgtatataatagtgaac 36939959  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 45396026 - 45395953
Alignment:
Q  11 gtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtat 83  Q
    |||| |||||||||||| | ||||||| |  ||||| ||| |||| ||||| ||||||||||||||||||||||    
T  45396026 gtccactccgttagtttcttaatgtctgatattttttatacgattttaaccgtttgattgcatgtccattgtat 45395953  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 24306101 - 24306049
Alignment:
Q  42 ttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaa 94  Q
    ||||||| | ||| ||||||||| |||| || |||||||||||||||||||||    
T  24306101 ttttgatttaattttaaccatttaattggatctccattgtatttaatagtgaa 24306049  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 46796037 - 46795939
Alignment:
Q  11 gtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    ||||||||||||||||| | ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||  || ||||||||    
T  46796037 gtcctctccgttagttttttaatgtctaaattttttgatatgattttaaccatttgattgcatgtccattgtatttaatagtgaaccgtcggcacctaa 46795939  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 36846561 - 36846470
Alignment:
Q  17 tccgttagtttgtaatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    ||||||||||| |||||||| || |||||||| ||||| |||||||||||||||||||||||| ||||||| |||||||  ||| |||||||    
T  36846561 tccgttagtttttaatgtctaaattttttgatttgattttaaccatttgattgcatgtccattatatttaacagtgaaccgtcaacacctaa 36846470  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 38554025 - 38554119
Alignment:
Q  2 actaacgtagtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaac 95  Q
    ||||| |||||| ||||| ||||||| | ||||||| || |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  38554025 actaatgtagtcatctccattagttttttaatgtctaaattttttgatatgattttaaccatttgatcgcacgtccattgtatttaatagtgaac 38554119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 47667283 - 47667381
Alignment:
Q  11 gtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    ||||||| ||||||||| | ||||||| || ||||| || ||||| |||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  47667283 gtcctctgcgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaa 47667381  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 38554208 - 38554280
Alignment:
Q  192 acatcagcgtcgtcaatctttatacaaaacc-agaaaaatttcagaaatcatcaacaacaatcaataataaaa 263  Q
    |||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  38554208 acatcagcttcatcaatctttatacaaaacctagaaaaattccagaaatcatcaacaacaatcaataacaaaa 38554280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 3528286 - 3528393
Alignment:
Q  2 actaacgtagtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttca 100  Q
    ||||| |||||||||||| ||||||| | ||||||| |  ||||| || ||||| |||||||||||||||||||||||||||| |||||||||||  |||    
T  3528286 actaatgtagtcctctccattagttttttaatgtctaattttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtca 3528385  T
Q  101 gcacctaa 108  Q
     |||||||    
T  3528386 acacctaa 3528393  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 29665594 - 29665500
Alignment:
Q  2 actaacgtagtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaac 95  Q
    ||||| |||||| ||||||||| ||| | ||||||| || |||||||| ||||| |||||||||||||||||||||||||||| |||| ||||||    
T  29665594 actaatgtagtcatctccgttaattttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccattgtatctaattgtgaac 29665500  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 41348375 - 41348442
Alignment:
Q  41 tttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||  |||||| |||| |||||||    
T  41348375 tttttgatatgattttaatcatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaa 41348442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 44499987 - 44499895
Alignment:
Q  16 ctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||||||||| |||||||  | |||||||| ||||| ||||| |||||||||||||||||||||| | |||||||||  |||||||||||    
T  44499987 ctccgttagtttgttaatgtctatattttttgatttgattttaaccgtttgattgcatgtccattgtatct-atagtgaaccgtcagcacctaa 44499895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 56001288 - 56001196
Alignment:
Q  2 actaacgtagtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaa 94  Q
    ||||| || ||||||| ||||||||| | ||||||| || ||||| || ||||| |||||||||||||||||||||||||||| ||||||||||    
T  56001288 actaatgtggtcctcttcgttagttttttaatgtct-aatttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaa 56001196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 26631208 - 26631129
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||| || |||||||| ||||| |||||| ||||||||||||| ||||||||||| ||||||   |||||||||||    
T  26631208 taatgtctaaattttttgatttgattttaaccacttgattgcatgtctattgtatttaacagtgaatcatcagcacctaa 26631129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 46795846 - 46795787
Alignment:
Q  204 tcaatctttatacaaaaccagaaaaatttcagaaatcatcaacaacaatcaataataaaa 263  Q
    ||||||||||||||||| |  ||||||| |||||||||||||||||||||||||| ||||    
T  46795846 tcaatctttatacaaaatccaaaaaattccagaaatcatcaacaacaatcaataacaaaa 46795787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 307641 - 307571
Alignment:
Q  193 catcagcgtcgtcaatctttatacaaaaccagaaaaatttcagaaatcatcaacaacaatcaataataaaa 263  Q
    ||||||| || |||||||||||||||||||  ||||||| ||||||| |||||||||||| ||||| ||||    
T  307641 catcagcttcatcaatctttatacaaaacccaaaaaattccagaaattatcaacaacaattaataacaaaa 307571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 52137538 - 52137631
Alignment:
Q  15 tctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    ||||||||||||| | ||||||| || |||||||||||||| ||||| |||||||||||||||||| || || |||||||||  |||||| ||||    
T  52137538 tctccgttagtttttcaatgtctaaattttttgatatgattttaaccgtttgattgcatgtccattatactt-atagtgaaccgtcagcagctaa 52137631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 307785 - 307713
Alignment:
Q  41 tttttgatatgattataaccatttgattgcatgtccattg-----tatttaatagtgaactttcagcacctaa 108  Q
    |||||||||||||| ||||||| |||||||||||||||||     |||||||||||||||  |||||||||||    
T  307785 tttttgatatgattttaaccatatgattgcatgtccattgtattgtatttaatagtgaaccgtcagcacctaa 307713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 35348903 - 35348987
Alignment:
Q  9 tagtcctctccgttag-tttgtaatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtg 92  Q
    |||||| ||||||||| ||| |||||||| || |||||||| ||||| ||||||||||||||  |||||||||  ||||||||||    
T  35348903 tagtcccctccgttagctttttaatgtctaaaatttttgatttgattttaaccatttgattgagtgtccattgcgtttaatagtg 35348987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 26376446 - 26376513
Alignment:
Q  41 tttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||| ||||| ||||||||||||||||||| |||||||| ||||||| |||  | |||||||||    
T  26376446 tttttgatgtgattttaaccatttgattgcatgtacattgtatctaatagttaaccgtgagcacctaa 26376513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 49895180 - 49895247
Alignment:
Q  41 tttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||| ||||| |||||||||||||||| |||| |||||| |||||||||||  ||| |||||||    
T  49895180 tttttgatttgattctaaccatttgattgcaggtccgttgtatctaatagtgaaccatcaacacctaa 49895247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 39056552 - 39056615
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtg 92  Q
    |||||||| || |||||||| ||||| ||||||||||||||  |||||||||  ||||||||||    
T  39056552 taatgtctaaaatttttgatttgattttaaccatttgattgagtgtccattgcgtttaatagtg 39056615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 48253029 - 48253136
Alignment:
Q  2 actaacgtagtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttca 100  Q
    ||||| |||||| ||||||||||||| | ||||||| || |||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||    
T  48253029 actaatgtagtcatctccgttagttttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaactgtca 48253128  T
Q  101 gcacctaa 108  Q
     |||||||    
T  48253129 acacctaa 48253136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 47766971 - 47766864
Alignment:
Q  2 actaacgtagtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttca 100  Q
    ||||| || ||||||| ||||||||| | ||||||| || ||||| || ||||| |||||||||||||||||||||||||||| |||||||||||  |||    
T  47766971 actaatgtcgtcctctgcgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtca 47766872  T
Q  101 gcacctaa 108  Q
    ||||||||    
T  47766871 gcacctaa 47766864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 7271602 - 7271518
Alignment:
Q  11 gtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaa 94  Q
    |||| |||||||||||| | ||||||| ||||||||||| | ||| |||||||||||||||||||||||||||||| ||||||||    
T  7271602 gtcccctccgttagttttttaatgtctaaactttttgatttaattttaaccatttgattgcatgtccattgtattttatagtgaa 7271518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 53809513 - 53809406
Alignment:
Q  2 actaacgtagtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttca 100  Q
    ||||| || ||| ||||||||||||| | ||||||| || |||||||||| ||| |||||||||||||||||||| ||||||||||| ||||||   |||    
T  53809513 actaatgttgtcatctccgttagttttttaatgtctaaattttttgatataattttaaccatttgattgcatgtctattgtatttaacagtgaatcgtca 53809414  T
Q  101 gcacctaa 108  Q
    ||||||||    
T  53809413 gcacctaa 53809406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 10301807 - 10301732
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcac 104  Q
    |||||||| || |||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||  |||||||    
T  10301807 taatgtctaaattttttgatttgattttaaccatttgattgaatgtccattgtatttaacagtgaaccatcagcac 10301732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 10339995 - 10339906
Alignment:
Q  16 ctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcac 104  Q
    |||||||||||| | ||||||| || |||||||| |||||  ||||||||||||| ||||||||||||||||| |||||||  |||||||    
T  10339995 ctccgttagttttttaatgtctaaattttttgatttgatttgaaccatttgattgaatgtccattgtatttaacagtgaaccgtcagcac 10339906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 14744190 - 14744268
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||| || |||||||||||||| |||||  ||||||||||||||||| ||  | |||||||||  |||||||||||    
T  14744190 taatgtctaaattttttgatatgattttaaccgattgattgcatgtccattatacat-atagtgaaccatcagcacctaa 14744268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 48084718 - 48084671
Alignment:
Q  41 tttttgatatgattataaccatttgattgcatgtccattgtatttaat 88  Q
    |||||||| ||||| |||||||| ||||| ||||||||||||||||||    
T  48084718 tttttgatttgattttaaccattcgattgaatgtccattgtatttaat 48084671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 54750423 - 54750369
Alignment:
Q  41 tttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaac 95  Q
    |||||||| ||||| |||||||||||||| ||||||| ||||||| | |||||||    
T  54750423 tttttgatttgattttaaccatttgattgtatgtccaatgtattttacagtgaac 54750369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 17345415 - 17345488
Alignment:
Q  11 gtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtat 83  Q
    ||||||||||||||||| | ||||||| |  ||||| ||||||||  ||||||| ||||||||||| |||||||    
T  17345415 gtcctctccgttagttttttaatgtctaatatttttaatatgatttgaaccattcgattgcatgtctattgtat 17345488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 17288248 - 17288155
Alignment:
Q  16 ctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||||||| | ||||||| || |||||||||||||| |||| |||||||||||||||||||||||||||||||||||  |||||||||||    
T  17288248 ctccgttagttttttaatgtctaaattttttgatatgattttaactatttgattgcatgtccattgtatttaatagtgaaccgtcagcacctaa 17288155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 28326401 - 28326303
Alignment:
Q  11 gtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    ||||||||||||||||| | ||||||| || ||||| |||||||| |||||||||||||||||||||||| |||||||||||||||  || ||||||||    
T  28326401 gtcctctccgttagttttttaatgtctaaattttttaatatgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcggcacctaa 28326303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 26146696 - 26146617
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||| ||||||||||||||||| ||||||   |||||||||||||||||| ||||||||||||| ||| |||||||    
T  26146696 taatgtctaaactttttgatatgattttaaccacccgattgcatgtccattgtagttaatagtgaactctcatcacctaa 26146617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 41515120 - 41515199
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||| || ||||| |||||||| |||||||||||||||||||||||| |||||||||||||||  || ||||||||    
T  41515120 taatgtctaaagttttttatatgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcggcacctaa 41515199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 43442771 - 43442673
Alignment:
Q  11 gtcctctccgttagt-ttgtaatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||| |||||||||| || |||||||| || |||||||| ||||| |||| |||||||||||||||| |||||||||| |||||||  |||||||||||    
T  43442771 gtcccctccgttagtcttttaatgtctaaattttttgatttgattttaacaatttgattgcatgtccgttgtatttaacagtgaaccgtcagcacctaa 43442673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 17288085 - 17288014
Alignment:
Q  192 acatcagcgtcgtcaatctttatacaaaaccagaaaaatttcagaaatcatcaacaacaatcaataataaaa 263  Q
    |||||||| || |||||||||||||||||    ||||||| |||||||||||||||||||||||||||||||    
T  17288085 acatcagcttcatcaatctttatacaaaattcaaaaaattccagaaatcatcaacaacaatcaataataaaa 17288014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 45721776 - 45721679
Alignment:
Q  12 tcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||||||||||| | ||||||| || ||||| || ||||| ||||||||||||||||||| |||||||| ||||| |||||  |||| ||||||    
T  45721776 tcctctccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgttcattgtatctaataatgaaccgtcagtacctaa 45721679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 10955951 - 10956035
Alignment:
Q  9 tagtcctctccgttag-tttgtaatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtg 92  Q
    |||||| ||||||||| ||| |||||||| || |||||||| ||||| ||||||||||||||  |||||||||  ||||||||||    
T  10955951 tagtcccctccgttagatttttaatgtctaaaatttttgatttgattttaaccatttgattgagtgtccattgcgtttaatagtg 10956035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 35296807 - 35296757
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccatt 79  Q
    |||||||| || |||||||||||||| ||||| ||||||||||||||||||    
T  35296807 taatgtctaaattttttgatatgattttaaccgtttgattgcatgtccatt 35296757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 3330810 - 3330893
Alignment:
Q  21 ttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcac 104  Q
    ||||||||| ||||||| || |||||||| ||||| ||||| ||||||||||||| |||||||| | |||||||||  |||||||    
T  3330810 ttagtttgttaatgtctaaattttttgatttgattttaaccgtttgattgcatgttcattgtatct-atagtgaaccgtcagcac 3330893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 28326213 - 28326154
Alignment:
Q  204 tcaatctttatacaaaaccagaaaaatttcagaaatcatcaacaacaatcaataataaaa 263  Q
    |||||||||||||||||||   |||||| || ||||| ||||||||||||||||| ||||    
T  28326213 tcaatctttatacaaaacccagaaaattccataaatcgtcaacaacaatcaataacaaaa 28326154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 30333415 - 30333480
Alignment:
Q  43 tttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||| ||||| |||| ||| |||||| ||||| |||||||||| |||| ||| |||||||||||    
T  30333415 tttgatttgattttaacaattagattgcttgtcctttgtatttaacagtgtactgtcagcacctaa 30333480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 32653577 - 32653668
Alignment:
Q  17 tccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    ||||||||||| | |||| || || |||||||||| ||| ||||| |||||||||||||||||| ||  | | |||||||| |||||||||||    
T  32653577 tccgttagttttttaatgactaaaatttttgatatcattttaaccgtttgattgcatgtccattatacct-acagtgaactgtcagcacctaa 32653668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 41515305 - 41515341
Alignment:
Q  227 aaatttcagaaatcatcaacaacaatcaataataaaa 263  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  41515305 aaattccagaaatcatcaacaacaatcaataacaaaa 41515341  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 8188220 - 8188113
Alignment:
Q  2 actaacgtagtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttca 100  Q
    |||||||| ||||||||||||||||| | ||||||| || ||| |||||||||| |||||||||||||||||||||||| |||||||| ||||||  |||    
T  8188220 actaacgtggtcctctccgttagttttttaatgtctaaaatttctgatatgattttaaccatttgattgcatgtccattatatttaatggtgaaccatca 8188121  T
Q  101 gcacctaa 108  Q
     |||||||    
T  8188120 acacctaa 8188113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 224424 - 224352
Alignment:
Q  192 acatcagcgtcgtcaatctttatacaaaacc-agaaaaatttcagaaatcatcaacaacaatcaataataaaa 263  Q
    |||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  224424 acatcagcttcatcaatctttatacaaaacctagaaaaattccagaaatcatcaacaacaatcaataacaaaa 224352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 224610 - 224516
Alignment:
Q  2 actaacgtagtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaac 95  Q
    ||||| |||||| ||||||||||||| | ||||||| || |||||||||||| | |||||||||||| ||| || ||||||||||||||||||||    
T  224610 actaatgtagtcatctccgttagttttttaatgtctaaattttttgatatgactttaaccatttgatcgcacgttcattgtatttaatagtgaac 224516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 263
Target Start/End: Original strand, 5976052 - 5976111
Alignment:
Q  204 tcaatctttatacaaaaccagaaaaatttcagaaatcatcaacaacaatcaataataaaa 263  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||    
T  5976052 tcaatctttatacaaaacctagaaaatttcagaaatcatcaacaacaatcaataacaaaa 5976111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 9219289 - 9219380
Alignment:
Q  16 ctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacct 106  Q
    |||||||||||| | ||||||| || ||||| || ||||| ||||| ||||||||||||| |||||||||||||||||||| |||| |||||    
T  9219289 ctccgttagttttttaatgtctaaaattttttatttgattttaaccgtttgattgcatgttcattgtatttaatagtgaaccttcaacacct 9219380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 10736927 - 10736861
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaac 95  Q
    |||||||| || |||||||| ||||| |||||||||||||| ||||||||||||| |||||||||||    
T  10736927 taatgtctaaaatttttgatttgattttaaccatttgattgaatgtccattgtatctaatagtgaac 10736861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 5975880 - 5975941
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatag 90  Q
    |||||||| || |||||||||||||| |||||||||||||||||||||||| | ||||||||    
T  5975880 taatgtctaaagtttttgatatgattttaaccatttgattgcatgtccattatgtttaatag 5975941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 4124897 - 4124961
Alignment:
Q  42 ttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacct 106  Q
    ||||||| | ||| |||||||||||||| || ||||||||||||||||||||||  |||||||||    
T  4124897 ttttgatttaattttaaccatttgattgtatatccattgtatttaatagtgaaccgtcagcacct 4124961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 13519604 - 13519649
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgt 74  Q
    |||||||| ||  ||||||||||||| |||||||||||||||||||    
T  13519604 taatgtctaaaacttttgatatgattttaaccatttgattgcatgt 13519649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 1103942 - 1103878
Alignment:
Q  44 ttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    ||||| ||||| |||||||| |||| |||| ||||||||||||||||| |||  ||| |||||||    
T  1103942 ttgatttgattttaaccattagattacatgcccattgtatttaatagttaaccgtcaacacctaa 1103878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 26803226 - 26803129
Alignment:
Q  12 tcctctccgttagt-ttgtaatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    ||||||| |||||| || |||||| | || || ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||| |||||||    
T  26803226 tcctctctgttagtattttaatgtataaaattcttgatatgattttaaccatttgattgcatgtccattgtatttaacagtgaaccttcaccacctaa 26803129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 40110663 - 40110565
Alignment:
Q  11 gtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||| |||||||| | ||||| | || || ||||||||||| ||||||||||||||||||||||||||||||||  |||||| |||| |||||||    
T  40110663 gtcctctctgttagttttttaatgtataaaattattgatatgattttaaccatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaa 40110565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 40533593 - 40533514
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||| ||  ||||||||||||| |||||||| |||||||||||||||||| ||||||||||||  || ||||||||    
T  40533593 taatgtctaaaacttttgatatgattttaaccattggattgcatgtccattgtaattaatagtgaaccgtcggcacctaa 40533514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 24516473 - 24516516
Alignment:
Q  44 ttgatatgattataaccatttgattgcatgtccattgtatttaa 87  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  24516473 ttgatatgattttaaccatttgattgcatgtccattgtatttaa 24516516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 6048039 - 6048123
Alignment:
Q  24 gtttgtaatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||| ||||| || || |||||||| ||||| |||||||||||||| | ||||||||||| |||||||||||  ||| |||||||    
T  6048039 gtttttaatgcctaaattttttgatttgattctaaccatttgattggaggtccattgtatctaatagtgaaccatcaacacctaa 6048123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 48528857 - 48528806
Alignment:
Q  57 aaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    ||||||| |||||||||||||||||||||||||||||||  ||| |||||||    
T  48528857 aaccattagattgcatgtccattgtatttaatagtgaaccgtcaacacctaa 48528806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 12667283 - 12667208
Alignment:
Q  11 gtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtattt 85  Q
    |||| |||||||||||| | ||||||  || |||||||| ||||| ||| |||||||||||||||| |||||||||    
T  12667283 gtcccctccgttagttttttaatgtcgaaattttttgatttgattttaatcatttgattgcatgtctattgtattt 12667208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 14765105 - 14765033
Alignment:
Q  11 gtcctctccgttagtttgtaatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtat 83  Q
    ||||||||||||||| | |||||| |    ||||||||||||||  |||| |||||||||| |||||||||||    
T  14765105 gtcctctccgttagtatttaatgtttaggttttttgatatgatttcaaccttttgattgcaggtccattgtat 14765033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 51446846 - 51446782
Alignment:
Q  16 ctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccatt 79  Q
    |||||||||||| | ||| ||| || |||||||||||||| ||||  ||||||||||||||||||    
T  51446846 ctccgttagttttttaatatctaaattttttgatatgattttaactgtttgattgcatgtccatt 51446782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 18242318 - 18242220
Alignment:
Q  11 gtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||| |||||||||||| | |||||||||| ||||| || | ||| |||||||||||||||||||||||||||||| |||||||||  ||| |||||||    
T  18242318 gtcccctccgttagttttttaatgtcttaaatttttaatttaattttaaccatttgattgcatgtccattgtattttatagtgaaccatcatcacctaa 18242220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 138195 - 138132
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtg 92  Q
    |||||||| ||||||||||| | ||| |||||||  |||||||||||||||||| |||||||||    
T  138195 taatgtctaaactttttgatgtaattttaaccatccgattgcatgtccattgtagttaatagtg 138132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 146216 - 146153
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtg 92  Q
    |||||||| ||||||||||| | ||| |||||||  |||||||||||||||||| |||||||||    
T  146216 taatgtctaaactttttgatgtaattttaaccatccgattgcatgtccattgtagttaatagtg 146153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 18773759 - 18773832
Alignment:
Q  11 gtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtat 83  Q
    |||||||| |||||||| | ||||||| |  |||||||||||||| |||||||| ||||||||||| |||||||    
T  18773759 gtcctctctgttagttttttaatgtctgatgtttttgatatgattttaaccattcgattgcatgtctattgtat 18773832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 30232895 - 30232817
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||| |||||||| |||| ||| |||||||  |||||||||||||||||| || |||||||||  ||| |||||||    
T  30232895 taatgtctaaacttttttatataattttaaccatccgattgcatgtccattgtagtt-atagtgaaccgtcatcacctaa 30232817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 11968453 - 11968400
Alignment:
Q  32 tgtcttaactttttgatatgattataaccatttgattgcatgtccattgtattt 85  Q
    ||||| || |||||||| ||||| |||||||||||||||||||| ||| |||||    
T  11968453 tgtctaaaatttttgatttgattttaaccatttgattgcatgtctattatattt 11968400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 1147876 - 1147942
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaac 95  Q
    |||||||| ||||||||||||||||| |||||||  ||||||||||||||| || ||||||||||||    
T  1147876 taatgtctaaactttttgatatgattttaaccatccgattgcatgtccattctagttaatagtgaac 1147942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 19397657 - 19397724
Alignment:
Q  29 taatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaact 96  Q
    |||||||| ||  ||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||    
T  19397657 taatgtctaaaacttttgatataattttaaccattggattgcatgtccattgtaattaatagtgaact 19397724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 4830688 - 4830613
Alignment:
Q  9 tagtcctctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtat 83  Q
    ||||||||||||||||||| | ||||||| |  ||||||||||||||  ||||||| ||||| | |||||||||||    
T  4830688 tagtcctctccgttagtttttgaatgtctaatatttttgatatgatttcaaccattcgattgtaggtccattgtat 4830613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 4919966 - 4920004
Alignment:
Q  41 tttttgatatgattataaccatttgattgcatgtccatt 79  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  4919966 tttttgatatgattttaaccgtttgattgcatgtccatt 4920004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 25569908 - 25569968
Alignment:
Q  44 ttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcac 104  Q
    ||||||| ||| |||||| ||||||||||||| || |||||||| |||||||  |||||||    
T  25569908 ttgatatcattttaaccacttgattgcatgtctatagtatttaagagtgaaccatcagcac 25569968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 7007 - 7100
Alignment:
Q  16 ctccgttagtttgt-aatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtatttaatagtgaactttcagcacctaa 108  Q
    |||||||||||| | ||| ||| || |||||||||| ||| ||||| |||||||||||||||||| |||||||||||||||  ||| |||||||    
T  7007 ctccgttagtttttcaatatctaaattttttgatataattttaaccgtttgattgcatgtccattatatttaatagtgaaccgtcaacacctaa 7100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 11811 - 11884
Alignment:
Q  11 gtcctctccgttag-tttgtaatgtcttaactttttgatatgattataaccatttgattgcatgtccattgtat 83  Q
    |||||||||||||| ||| |||||||| |  |||||||| ||||| |||||||| ||||||||||  |||||||    
T  11811 gtcctctccgttagttttttaatgtctaatatttttgatgtgattttaaccattcgattgcatgtttattgtat 11884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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