View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0956_low_25 (Length: 250)
Name: NF0956_low_25
Description: NF0956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0956_low_25 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 44766488 - 44766707
Alignment:
| Q |
22 |
catcatcatcatcttcttcttgttgtttttcctctttgggacattcttccacgtcattctcctcaatcaccatcttcctaataggagaagaaccacgccg |
121 |
Q |
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| T |
44766488 |
catcatcatcatcttcttcttcttgtttttcctctttgggacattcttccac---------ctcaatcaccatcttcctaataggagaagaaccacgccg |
44766578 |
T |
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| Q |
122 |
caagcgtttaagcttcttcgaggaagaatcctgaatccactcaatcttctccttagaaagatcaatactttcctcttcatcatcatcgtaacgaattcga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44766579 |
caagcgtttaagcttcttcgaggaagaatcctgaatccactcaatcttctccttagaaagatcaatactttcctcttcatcatcatcgtaacgaattcga |
44766678 |
T |
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| Q |
222 |
tgtttggaagtaacggtatcgaaagattt |
250 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
44766679 |
tgtttggaagtaacggtatcgaaagattt |
44766707 |
T |
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