View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0956_low_27 (Length: 244)
Name: NF0956_low_27
Description: NF0956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0956_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 40925078 - 40925177
Alignment:
| Q |
126 |
ttcacaaatatttacctgtgctggttgaaatctggggataatatagagatgaatgtgcaccttaatgaatcaatttacaaaggaatgaatgttgtttatg |
225 |
Q |
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| T |
40925078 |
ttcacaaatatttacctgtgctggttgaaatctggggataatatagagatgaatgtgcaccttaatgaatcaatttacaaaggaatgaatgttgtttatg |
40925177 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 40924958 - 40925023
Alignment:
| Q |
1 |
atctttatcaagtatcaacatcacatcctctgcagaacctctaatgatttcaattaagactgatat |
66 |
Q |
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| T |
40924958 |
atctttatcaagtatcaacatcacatcctctgcagaacctgtaatgatttcaattaagactgatat |
40925023 |
T |
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