View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0956_low_28 (Length: 241)
Name: NF0956_low_28
Description: NF0956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0956_low_28 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 40924412 - 40924649
Alignment:
| Q |
4 |
aagccctagctgttgctgctatgtgtgttgaagagcagtctagtatgcggccggttatagcagatgtggtcgcagctctagatttcattgcttcacataa |
103 |
Q |
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| T |
40924412 |
aagcccttgctgttgctgctatgtgtgttgaagagcagtctagtatgcggccggttatagcagatgtggtcgcagctctagatttcattgcttcacataa |
40924511 |
T |
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| Q |
104 |
atatgatccacaagttcatccaatacaaagctcgagataaggttcatcttctccaaggagtgaaggtcatagacacgttacaagtaatgactatgagaca |
203 |
Q |
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| T |
40924512 |
atatgatccacaagttcatccaatacaaagctcgagataaggttcatcttctccaaggagtgaaggtcatagacgcgttacaagtaatgactctgagaca |
40924611 |
T |
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| Q |
204 |
gacagattgggagactagaaaaagtggaggagtgtttt |
241 |
Q |
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| T |
40924612 |
gacagattgggagactagaaaaagtggagtagtgtttt |
40924649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 40934294 - 40934513
Alignment:
| Q |
16 |
ttgctgctatgtgtgttgaagagcagtctagtatgcggccggttatagcagatgtggtcgcagctctagatttcattgcttcacataaatatgatccaca |
115 |
Q |
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| T |
40934294 |
ttgcttctatgtgtgttgtagagcagactaatatgcggccggttatagcagatgtggtctcagctctagatttccttgcttctcaaaaatatgaaccacg |
40934393 |
T |
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| Q |
116 |
agttcatccaatacaaagctcgagataaggttcatcttctccaaggag------tgaaggtcatagacacgttacaagtaatgactatgagacagacaga |
209 |
Q |
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| T |
40934394 |
ggttcatccaatacaaaggtcgagatatggttcatcttcttcaagaagtagggctaaaggtcatagacgcgttactagtaatgtctcagagaaagacaaa |
40934493 |
T |
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| Q |
210 |
ttgggagactagaaaaagtg |
229 |
Q |
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| T |
40934494 |
ctgggaaattagaaaaagtg |
40934513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 40908157 - 40908387
Alignment:
| Q |
16 |
ttgctgctatgtgtgttgaagagcagtctagtatgcggccggttatagcagatgtggtcgcagctctagatttcattgcttcacataaatatgatccaca |
115 |
Q |
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| T |
40908157 |
ttgctgctatgtgtgttcaagagcagcctaatatgcgtccggttatagctgatgtggtcacagctctaaattacctagcttcacaaaaatatgatccgca |
40908256 |
T |
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| Q |
116 |
agttcatccaatacaaagctcgagataaggttcatcttctcca------aggagtgaaggtcatagacacgttacaagtaatgactatgagacagacaga |
209 |
Q |
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| T |
40908257 |
aattcatcatatacaaggctcgagaaaaggttcatcttctccaagaagtaggagtgaacgtcatagacgtgttactagcaaggactctgagacagacaga |
40908356 |
T |
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| Q |
210 |
ttgggagactagaaaaagtggaggagtgttt |
240 |
Q |
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| T |
40908357 |
tttggagattagattaagtggagtagtgttt |
40908387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 40942494 - 40942590
Alignment:
| Q |
59 |
tatagcagatgtggtcgcagctctagatttcattgcttcacataaatatgatccacaagttcatccaatacaaagctcgagataaggttcatcttct |
155 |
Q |
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| T |
40942494 |
tatagccgatgtggccacagttctaaattgcattgctacacatcagtacgatccacaagttcatccgatacaaaactcgtgaaaaggttcctcttct |
40942590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 55064287 - 55064421
Alignment:
| Q |
26 |
gtgtgttgaagagcagtctagtatgcggccggttatagcagatgtggtcgcagctctagatttcattgcttcacataaatatgatccacaagttcatcca |
125 |
Q |
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| T |
55064287 |
gtgtgttcaagagcagcctaatatgcggcctgttatagcagatgtggtcacagctctagattacattgtttcccaaaattatgatccacaagttcatcca |
55064386 |
T |
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| Q |
126 |
atacaaagctcgagataaggttcatcttctccaag |
160 |
Q |
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| T |
55064387 |
atacaaagctcgagataattttcatcttctccaag |
55064421 |
T |
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