View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0956_low_3 (Length: 540)
Name: NF0956_low_3
Description: NF0956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0956_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 448
Target Start/End: Original strand, 13135190 - 13135630
Alignment:
| Q |
8 |
gagcagagaaggcaacaagtggggacattattgaagaaggtagaatcggatatgtgtcatatactaagacaaaaggatgaacaaatagcgcaagcgacaa |
107 |
Q |
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| T |
13135190 |
gagcaaagaaggcagcaagtggggacattattgaagaaggtagaatcggatatgtgtcatatactaagacaaaaggatgaacaaatagcacaagcgacaa |
13135289 |
T |
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| Q |
108 |
agaaaaggttggagctggaacaattcttgatcagactagaaacagataatcaaatgtggcggagagcttctcgggaaaatgaagctatggtgttgtccct |
207 |
Q |
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| T |
13135290 |
agaaaaggttggagctggaacaattcttgatcagactagaaacagataatcaaatgtggcggagagcttctcgggaaaatgaagctatggtgttgtccct |
13135389 |
T |
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| Q |
208 |
caataacgccttagaacaaatcaaagaaagaacattggctatagaagaagtagagtcatgttgtgacatgaaaaatcatgaagaagaaacatgggaaaac |
307 |
Q |
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| T |
13135390 |
caataacgccttagaacaaatcaaagaaagaacattggctatagaagaagtagagtcatgttgtgacatgaaaaatcatgaagaagaaacatgggaaaac |
13135489 |
T |
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| Q |
308 |
acaagtctaaacacaatttgcaaatgttgttattcacaagagtcatcttttatgttccttccttgcaggcacctatgttcttgtaaatcatgtgaacctt |
407 |
Q |
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| T |
13135490 |
acaagtctaaacacaatttgcaaatgttgttattcacaagagtcatcttttatgttccttccttgcaggcacctatgttcatgtaaatcatgtgaacctt |
13135589 |
T |
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| Q |
408 |
ctctccaaacatgtcctgtgtgcttaatgccaaagagatct |
448 |
Q |
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| T |
13135590 |
ctctccaaacatgtcctgtgtgcttaatgccaaagagatct |
13135630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 30 - 273
Target Start/End: Original strand, 55208744 - 55208990
Alignment:
| Q |
30 |
ggacattattgaagaaggtagaatcggatatgtgtcatatactaagacaaaaggatgaacaaatagcgcaagcgacaaagaaaaggttggagctggaaca |
129 |
Q |
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| T |
55208744 |
ggacaatattgaagaaggtagaatatgatgtgtttcatatactaagacaaaaggatgaacaaattgcacaagcgacgaagaaaaggatggagttggaaca |
55208843 |
T |
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| Q |
130 |
attcttgatcagactagaaacagataatcaaatgtggcggagagcttctcgggaaaatgaagctatggtgttgtccctcaataacgccttagaacaaatc |
229 |
Q |
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| T |
55208844 |
atttttgacaagactagagacagagaatcaatcatggcggagagctgcacatgaaaatgaagctatggtgttatcgctcaataacgccttagaatctatc |
55208943 |
T |
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| Q |
230 |
aaagaa---agaacattggctatagaagaagtagagtcatgttgtga |
273 |
Q |
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| T |
55208944 |
aaagaaattagagcattggtagtagaagatgtagagtcatgttgtga |
55208990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 323 - 448
Target Start/End: Original strand, 55209016 - 55209141
Alignment:
| Q |
323 |
atttgcaaatgttgttattcacaaga-gtcatcttttatgttccttccttgcaggcacctatgttcttgtaaatcatgtgaaccttctctccaaacatgt |
421 |
Q |
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| T |
55209016 |
atttgcaaatgttgtcattca-aggatgtcgtcttttatgttccttccttgcaggcatctttgttcgtgtaaagcgtgtgaaccttctctccaagcatgt |
55209114 |
T |
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| Q |
422 |
cctgtgtgcttaatgccaaagagatct |
448 |
Q |
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| T |
55209115 |
cctgtgtgcctcatgccaaagagatct |
55209141 |
T |
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