View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0956_low_4 (Length: 518)
Name: NF0956_low_4
Description: NF0956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0956_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40924797 - 40925023
Alignment:
| Q |
1 |
agccatcaattgatatatagtctccatcataactatatgttattgtgaattgtcagggttgtcaaatagcggctatagtgcaacagaatttgaacaaatt |
100 |
Q |
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| T |
40924797 |
agccatcaattgatatatagtctccatcataactatatgttattgtgaattgccagggttgtcaaatagcggctatagtgcaacagaatttgaacaaatt |
40924896 |
T |
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| Q |
101 |
gctattgtgaaatagttgtttgcggcgttacagtgtaacaaagtctaaataactatttcaaatctttatcaagtatcaacatcacatcctctgcagaacc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40924897 |
gctattgtgaaatagttgtttgcggcattacagtataacaaagtctaaacaactatttcaaatctttatcaagtatcaacatcacatcctctgcagaacc |
40924996 |
T |
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| Q |
201 |
tctaatgatttcaattaagactgatat |
227 |
Q |
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| T |
40924997 |
tgtaatgatttcaattaagactgatat |
40925023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 287 - 386
Target Start/End: Original strand, 40925078 - 40925177
Alignment:
| Q |
287 |
ttcacaaatatttacctgtgctggttgaaatctggggataatatagagatgaatgtgcaccttaatgaatcaatttacaaaggaatgaatgttgtttatg |
386 |
Q |
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| T |
40925078 |
ttcacaaatatttacctgtgctggttgaaatctggggataatatagagatgaatgtgcaccttaatgaatcaatttacaaaggaatgaatgttgtttatg |
40925177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 18395722 - 18395771
Alignment:
| Q |
59 |
ttgtcaaatagcggctatagtgcaacagaatttgaacaaattgctattgt |
108 |
Q |
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| T |
18395722 |
ttgtcaaataacggctatagtgcaacagaatttgaacaaattgctattgt |
18395771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 31731942 - 31731992
Alignment:
| Q |
58 |
gttgtcaaatagcggctatagtgcaacagaatttgaacaaattgctattgt |
108 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
31731942 |
gttgtcaaatagcggctatagtgtaatggaatttgaacaaattgctattgt |
31731992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 24092438 - 24092392
Alignment:
| Q |
58 |
gttgtcaaatagcggctatagtgcaacagaatttgaacaaattgcta |
104 |
Q |
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| T |
24092438 |
gttgtcaaatagcggctatagtgaaacggaattttaacaaactgcta |
24092392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 6518239 - 6518192
Alignment:
| Q |
61 |
gtcaaatagcggctatagtgcaacagaatttgaacaaattgctattgt |
108 |
Q |
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|||||||||||||||||||| | | ||||||||||||||||||||||| |
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| T |
6518239 |
gtcaaatagcggctatagtgtatctgaatttgaacaaattgctattgt |
6518192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 6497161 - 6497211
Alignment:
| Q |
58 |
gttgtcaaatagcggctatagtgcaacagaatttgaacaaattgctattgt |
108 |
Q |
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||||||||||||||||||||||| || |||||||||||||||| |||||| |
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| T |
6497161 |
gttgtcaaatagcggctatagtgtaatggaatttgaacaaattggtattgt |
6497211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 7253447 - 7253500
Alignment:
| Q |
53 |
tcagggttgtcaaatagcggctatagtgcaacagaatttgaacaaattgctatt |
106 |
Q |
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||||||||||||||||| |||||||||| | ||||||||||||||||||||| |
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| T |
7253447 |
tcagggttgtcaaatagtggctatagtgtagaggaatttgaacaaattgctatt |
7253500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 5576971 - 5576921
Alignment:
| Q |
58 |
gttgtcaaatagcggctatagtgcaacagaatttgaacaaattgctattgt |
108 |
Q |
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|||||||||| | |||||||||| | |||||||||||||| |||||||||| |
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| T |
5576971 |
gttgtcaaatggaggctatagtgtagcagaatttgaacaagttgctattgt |
5576921 |
T |
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