View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0956_low_8 (Length: 414)
Name: NF0956_low_8
Description: NF0956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0956_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 40924821 - 40924412
Alignment:
| Q |
1 |
ggagactatatatcaattgatggctaatgaacttcaagattattagctcgagcctaaacaataatccaaatgagaagcatctttaatgcggaatagtaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40924821 |
ggagactatatatcaattgatggctaatgaacttcaagattagtagcttgagcctaaacaataatccaaatgagaagcatctttaatgcggaatagtaat |
40924722 |
T |
|
| Q |
101 |
ctcacacgtacaaagaggtggatggaactaaaaagatgaataacctgttatctcctgtaaagtaagtgtctcaaaacactcctccactttttctagtctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40924721 |
ctcacacgtacaaagaggtggatggaactaaaaagatgaataacctgttatctcctgtaaagtaagtgtctcaaaacactactccactttttctagtctc |
40924622 |
T |
|
| Q |
201 |
ccaatctgtctgtctcatagtcattacttgtaacgtgtctatgaccttcactccttggagaagatgaaccttatctcgagctttgtattggatgaacttg |
300 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40924621 |
ccaatctgtctgtctcagagtcattacttgtaacgcgtctatgaccttcactccttggagaagatgaaccttatctcgagctttgtattggatgaacttg |
40924522 |
T |
|
| Q |
301 |
tggatcatatttatgtgaagcaatgaaatctagagctgcgaccacatctgctataaccggccgcatactagactgctcttcaacacacatagcagcaaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40924521 |
tggatcatatttatgtgaagcaatgaaatctagagctgcgaccacatctgctataaccggccgcatactagactgctcttcaacacacatagcagcaaca |
40924422 |
T |
|
| Q |
401 |
gctagggctt |
410 |
Q |
| |
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|| ||||||| |
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| T |
40924421 |
gcaagggctt |
40924412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 162 - 398
Target Start/End: Complemental strand, 40934533 - 40934294
Alignment:
| Q |
162 |
gtaagtgtctcaaaacactcctccactttttctagtctcccaatctgtctgtctcatagtcattacttgtaacgtgtctatgaccttca------ctcct |
255 |
Q |
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| T |
40934533 |
gtaagtgtctcaaaacactac---actttttctaatttcccagtttgtctttctctgagacattactagtaacgcgtctatgacctttagccctacttct |
40934437 |
T |
|
| Q |
256 |
tggagaagatgaaccttatctcgagctttgtattggatgaacttgtggatcatatttatgtgaagcaatgaaatctagagctgcgaccacatctgctata |
355 |
Q |
| |
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|| |||||||||||| |||||||| ||||||||||||||||| |||| |||||||| || ||||||| |||||||||||||| |||||||||||||||| |
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| T |
40934436 |
tgaagaagatgaaccatatctcgacctttgtattggatgaacccgtggttcatatttttgagaagcaaggaaatctagagctgagaccacatctgctata |
40934337 |
T |
|
| Q |
356 |
accggccgcatactagactgctcttcaacacacatagcagcaa |
398 |
Q |
| |
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| T |
40934336 |
accggccgcatattagtctgctctacaacacacatagaagcaa |
40934294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 174 - 398
Target Start/End: Complemental strand, 40908387 - 40908157
Alignment:
| Q |
174 |
aaacactcctccactttttctagtctcccaatctgtctgtctcatagtcattacttgtaacgtgtctatgaccttcactcct------tggagaagatga |
267 |
Q |
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|
||||||| |||||||| |||| ||||| ||||||||||||||| |||| || || ||||| ||||||||| ||||||||| |||||||||||| |
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| T |
40908387 |
aaacactactccacttaatctaatctccaaatctgtctgtctcagagtccttgctagtaacacgtctatgacgttcactcctacttcttggagaagatga |
40908288 |
T |
|
| Q |
268 |
accttatctcgagctttgtattggatgaacttgtggatcatatttatgtgaagcaatgaaatctagagctgcgaccacatctgctataaccggccgcata |
367 |
Q |
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||||| |||||||| |||||| |||||| ||| ||||||||||| |||||||| | | ||| |||||||| ||||||||| ||||||||||| |||||| |
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| T |
40908287 |
accttttctcgagccttgtatatgatgaatttgcggatcatatttttgtgaagctaggtaatttagagctgtgaccacatcagctataaccggacgcata |
40908188 |
T |
|
| Q |
368 |
ctagactgctcttcaacacacatagcagcaa |
398 |
Q |
| |
|
||| |||||||| ||||||||||||||||| |
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| T |
40908187 |
ttaggctgctcttgaacacacatagcagcaa |
40908157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 355
Target Start/End: Complemental strand, 40942590 - 40942494
Alignment:
| Q |
259 |
agaagatgaaccttatctcgagctttgtattggatgaacttgtggatcatatttatgtgaagcaatgaaatctagagctgcgaccacatctgctata |
355 |
Q |
| |
|
|||||| ||||||| || |||| ||||||| ||||||||||||||||| || | ||||| ||||||| ||| |||| ||| | ||||||| |||||| |
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| T |
40942590 |
agaagaggaaccttttcacgagttttgtatcggatgaacttgtggatcgtactgatgtgtagcaatgcaatttagaactgtggccacatcggctata |
40942494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 40934642 - 40934592
Alignment:
| Q |
50 |
gagcctaaacaataatccaaatgagaagcatctttaatgcggaatagtaat |
100 |
Q |
| |
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||||| |||||| ||||| ||||||||||||||||||||| ||||||||| |
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| T |
40934642 |
gagccaaaacaagaatcctaatgagaagcatctttaatgcaaaatagtaat |
40934592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 254 - 388
Target Start/End: Complemental strand, 55064421 - 55064287
Alignment:
| Q |
254 |
cttggagaagatgaaccttatctcgagctttgtattggatgaacttgtggatcatatttatgtgaagcaatgaaatctagagctgcgaccacatctgcta |
353 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || || ||| ||||| |||||||||||| |||||||||||||| |
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| T |
55064421 |
cttggagaagatgaaaattatctcgagctttgtattggatgaacttgtggatcataattttgggaaacaatgtaatctagagctgtgaccacatctgcta |
55064322 |
T |
|
| Q |
354 |
taaccggccgcatactagactgctcttcaacacac |
388 |
Q |
| |
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|||| ||||||||| ||| |||||||| ||||||| |
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| T |
55064321 |
taacaggccgcatattaggctgctcttgaacacac |
55064287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 55064646 - 55064562
Alignment:
| Q |
56 |
aaacaataatccaaatgagaagcatctttaatgcggaatagtaatctcacacgtacaaagaggtggatggaactaaaaagatgaat |
141 |
Q |
| |
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| T |
55064646 |
aaacaagaatcctgatgagaagcatctttaatgcaaaatagtaat-tcacgtgtacaaagaggaagatggaactaaaaagaagaat |
55064562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 55064496 - 55064443
Alignment:
| Q |
162 |
gtaagtgtctcaaaacactcctccactttttctagtctcccaatctgtctgtct |
215 |
Q |
| |
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|||| ||||||| ||| || |||| ||||||||||| ||||||||||||||||| |
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|
| T |
55064496 |
gtaaatgtctcataactctactcccctttttctagtttcccaatctgtctgtct |
55064443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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