View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0957_high_1 (Length: 581)
Name: NF0957_high_1
Description: NF0957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0957_high_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 6 - 581
Target Start/End: Original strand, 43076212 - 43076787
Alignment:
| Q |
6 |
agtgagatgaaccaaaacaaaaaatattaaaagaacaattttatgaacaaaaagtgcaacatgtcccgtgcctgtggtttagaatttagattgttcatct |
105 |
Q |
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| T |
43076212 |
agtgacatgaaccaaaacaaaaaatattaaaagaacaattttatgaacaaaaagtgcaacatgtcctgtgcctgtggtttagaatttagattgttcatct |
43076311 |
T |
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| Q |
106 |
ctcttaatttctttgaacatatatcaatagatgcaatgcacccgtgacctatctatctatctctctgtaaatgattctctgattcagcttcagttaatat |
205 |
Q |
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| T |
43076312 |
ctcttaatttctttgaacatatatcaatagatgcaatgcacccgtgacctatctatctatctctctgtaaatgattctctgattcagcttcacttaatat |
43076411 |
T |
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| Q |
206 |
atggtcccacctgaataacataacttgtatataaaaccatgacacaagccaatttttgtatagttccaaatcacattctccacctacatttttcttttgt |
305 |
Q |
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| T |
43076412 |
atggtcccacctgaataacataacttgtatataaaaccatgacacaagccaatttttgtatagttccaaatcacattctccacctacatttttcttttgt |
43076511 |
T |
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| Q |
306 |
ttgtaacattctttctttctaagaataatacttcaaacatgaatttcattttctatgttttattacttcttcttgttctacaaaatcccattgtaacaca |
405 |
Q |
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| T |
43076512 |
ttgtaacattctttctttctaagaataatacttcaaacatgaatttcattttctatgttttattacttcttcttgttctacaaaatcccattgtaacaca |
43076611 |
T |
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| Q |
406 |
atgtcatacaaagggacttcgaccaaaaccttctactggatttggaatgtctgccaatatgaccaaagtccaagaatcagaacaacaattcatgaaatgg |
505 |
Q |
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| T |
43076612 |
atgtcatacaaagggacttcgaccaaaaccttctactggatttggaatgtctgccaatatgaccaaagtccaagaatcagaacaacaattcatgaaatgg |
43076711 |
T |
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| Q |
506 |
gtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttga |
581 |
Q |
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| T |
43076712 |
gtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttga |
43076787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 483 - 580
Target Start/End: Complemental strand, 33966889 - 33966792
Alignment:
| Q |
483 |
cagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttg |
580 |
Q |
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| T |
33966889 |
cagaacaacaattcatgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttg |
33966792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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