View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0957_high_24 (Length: 209)
Name: NF0957_high_24
Description: NF0957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0957_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 19116630 - 19116479
Alignment:
| Q |
4 |
ttttttatcaatgtaataattacaacattttttatatacaaagttactctagttttttaaccaatgctatttaggatacacattaacaattctcattaaa |
103 |
Q |
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| T |
19116630 |
ttttttatcaatgttataattacaacattttttatatacaaagctactctaattttttaaccaatgctgtttaggatacacattagc-attctcattaaa |
19116532 |
T |
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| Q |
104 |
tttaaagt---ttgttgtgctatgagtaaactatgtggaaacaataatatcat |
153 |
Q |
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| T |
19116531 |
tttaaagtttgttgttgtgctatgagtaaactatgtggaaacaataatatcat |
19116479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 19116459 - 19116400
Alignment:
| Q |
150 |
tcataatttattgtagtgttatgaattaactatgtcggagacaataatatcatataaatg |
209 |
Q |
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| T |
19116459 |
tcataatttattgtagtgttatgaatgagctatgtcggagacaataatactatataaatg |
19116400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 1738586 - 1738630
Alignment:
| Q |
5 |
tttttatcaatgtaataattacaacattttttatatacaaagtta |
49 |
Q |
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| T |
1738586 |
tttttatcaatctaataattacaacactttttttatacaaagtta |
1738630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 38575347 - 38575314
Alignment:
| Q |
5 |
tttttatcaatgtaataattacaacattttttat |
38 |
Q |
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| T |
38575347 |
tttttatcaatgtaataatcacaacattttttat |
38575314 |
T |
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