View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0957_high_8 (Length: 445)
Name: NF0957_high_8
Description: NF0957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0957_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 30 - 426
Target Start/End: Original strand, 24323090 - 24323486
Alignment:
| Q |
30 |
gaattgtggtatgatagatgtgttaggnnnnnnnggttactcaatagatagatgtgttaggtgataaattgctttaataacttgtttgtatttgataaac |
129 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24323090 |
gaattgtggtatgatagatgtgttaggtttttttggttactcaatagatagatgtgttaggtgataaattgctttaataacttgtttgtatttgataaac |
24323189 |
T |
|
| Q |
130 |
cttgattttatataagtttattaatcatttgatatatagaaatccttacatcaatcaattcatcaattgtgttatagctagatttcaatttgtgataatc |
229 |
Q |
| |
|
| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24323190 |
ttcgattttctataagtttattaatcacttgatatatagaaatccttacatcaatcaattcatcaattgtgttatagctagatttcaatttgtgataatc |
24323289 |
T |
|
| Q |
230 |
tcttgtctatgtgttaggtttgatttgagaatgtcaaggacttgtaataaagtgtttataatttgattgtggattattatctaaattgtgaacatcatgg |
329 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24323290 |
tcttgtctaagtgttaagtttgatttgagaatgtcaaggacttgtaataaagtgtttataatttgattgtggattattatctaaattgtgaacatcatgt |
24323389 |
T |
|
| Q |
330 |
tcaaaattggttaaccgtaaacattgttttagtttgattatcatcttatccgcattatcattcaaataatcaaagcgttgtaaagctttttcaaaaa |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24323390 |
tcaaaattggttaaccgtaaacattgttttagtttaattatcatcttatccgcattatcattcaaataatcaaagtgttgtaaagctttttcaaaaa |
24323486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 119 - 371
Target Start/End: Complemental strand, 16241801 - 16241549
Alignment:
| Q |
119 |
atttgataaaccttgattttatataagtttattaatcatttgatatat-agaaatccttacatcaatcaattcatcaattgtgttatagctagatttcaa |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||||| ||| | ||||| ||| || |
|
|
| T |
16241801 |
atttgataaaccttgattttctataagtttattaatcacttgatatattagaaattcttgtatcaatcaattcatcaattgggttgt-gctagtttt-aa |
16241704 |
T |
|
| Q |
218 |
tttgtgataatctcttgtctatgtgttagg-tttgatttgagaatgtcaaggacttgtaataaagtgtttataatttgattgtggattattatctaaatt |
316 |
Q |
| |
|
||||| |||| |||||| || ||||| || ||| || ||||||||| |||| |||||||| ||||| ||| ||||| ||||||||| ||||| | |||| |
|
|
| T |
16241703 |
cttgtgttaatatcttgtgtaagtgttggggtttcatgtgagaatgttaaggtcttgtaattaagtgcttaaaattttattgtggatcattatatcaatt |
16241604 |
T |
|
| Q |
317 |
gtgaacatcatggtcaaaattggttaaccgtaaacattgttttagtttgattatc |
371 |
Q |
| |
|
|||||| || || | ||||||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
16241603 |
gtgaacttcttgtttaaaattggttaactgtaaagatttttttagtttgattatc |
16241549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 403
Target Start/End: Original strand, 4877283 - 4877592
Alignment:
| Q |
96 |
aattgctttaataacttgtttgtatttgataaaccttgattttatataagtt--tattaatcatttgatatat-agaaatccttacatcaatcaattcat |
192 |
Q |
| |
|
|||||||| ||||| |||||||| |||| ||| ||||||||||||||||| ||||||||| ||| ||||| || ||| ||| ||||||| |||||| |
|
|
| T |
4877283 |
aattgcttcaataatttgtttgtcattgaagaacattgattttatataagttggtattaatcacttggtatattaggaatacttgtatcaatccattcat |
4877382 |
T |
|
| Q |
193 |
caattgtgttatagctagatttcaatttgtgataatctcttgtctatgtgttaggtttgatttgagaatgtcaaggacttgtaataaagtgtttataatt |
292 |
Q |
| |
|
|| || || ||| ||||||||||||||| ||||| | ||| || ||| |||||||||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
4877383 |
catttaa-ttgtagttagatttcaatttgtaataattttctgtttaaagattatgtttgatttgagaatgtcaaggtcttgtaattaagtgttgctaatt |
4877481 |
T |
|
| Q |
293 |
tgattgtggattattatctaaattgtgaacatcatggtcaaaattggttaaccgtaaacattgttttagtttgattatcatcttatccgcattatcattc |
392 |
Q |
| |
|
|||||||| | | || | ||||||||| ||| || | ||| ||| || | |||||||||||||||| ||||| |||| ||||| ||||||| ||| |
|
|
| T |
4877482 |
tgattgtgcaacaataccccaattgtgaatatcttgttgaaatttgatttattctaaacattgttttagtgtgattttcattgtatccacattatcgttc |
4877581 |
T |
|
| Q |
393 |
aaataatcaaa |
403 |
Q |
| |
|
|||| ||||| |
|
|
| T |
4877582 |
caatagtcaaa |
4877592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 9421154 - 9421040
Alignment:
| Q |
95 |
aaattgctttaataacttgtttgtatttgataaaccttgattttatataagtttattaatcatttgatata-tagaaatccttacatcaatcaattcatc |
193 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| | |||||| ||||||| ||| |||| |||||||| | |||||| || || |||||||||||| |
|
|
| T |
9421154 |
aaattgctttcataacttgtttacatttgataaacttcgattttctataagtggatttatcacttgatatatttgaaatctttgtattaatcaattcatc |
9421055 |
T |
|
| Q |
194 |
aattgtgttatagct |
208 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9421054 |
aattgtgttatagct |
9421040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 425
Target Start/End: Complemental strand, 20314030 - 20313724
Alignment:
| Q |
119 |
atttgataaaccttgattttat-ataagtttattaatcatttgatatat-agaaatccttacatcaatcaattcatcaattgtgttatagctagatttca |
216 |
Q |
| |
|
|||||||||||||||||||| | |||| || |||||||| |||||||| || ||||||| ||||||||||||||||| | |||||||||||| | | | |
|
|
| T |
20314030 |
atttgataaaccttgatttttttataaattgattaatcacctgatatattaggaatccttgtatcaatcaattcatcaactatgttatagctagttatta |
20313931 |
T |
|
| Q |
217 |
atttgtgataatctcttgtctatgtgttaggtttgatttgagaatgtcaaggacttgtaataaagtgtttataatttgattgtggattattatctaaatt |
316 |
Q |
| |
|
||||| || || ||| | || ||||||||||||||||||||| |||||||| | || ||| | || ||||| ||||| || ||| | | |||| |
|
|
| T |
20313930 |
--ttgtgtagatttcatgtgttagttttaggtttgatttgagaatgttaaggacttttgattaagagcttgaaattttattgtagaacattttatcaatt |
20313833 |
T |
|
| Q |
317 |
gtgaacatcatggtcaaaattggttaaccgtaaacattgttttagtttgattatcatcttatccgcattatcattcaaataatcaaagcgttgtaaagct |
416 |
Q |
| |
|
|||||||| | ||||| || |||| |||||||||||||||||||||||| | |||||||||||||||| |||| | ||| ||||| || ||| |
|
|
| T |
20313832 |
atgaacatcttattcaaatctgattaattaaaaacattgttttagtttgattatcctagcatccgcattatcattccaatagtgaaatcgttgcaatgct |
20313733 |
T |
|
| Q |
417 |
ttttcaaaa |
425 |
Q |
| |
|
||||||||| |
|
|
| T |
20313732 |
ttttcaaaa |
20313724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 8462414 - 8462471
Alignment:
| Q |
81 |
atgtgttaggtgataaattgctttaataacttgtttgtatttgataaaccttgatttt |
138 |
Q |
| |
|
|||||||||| || |||||||| |||||||||||||||||| | |||| |||||||| |
|
|
| T |
8462414 |
atgtgttagggaattaattgcttcaataacttgtttgtattttaaaaacattgatttt |
8462471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 16717504 - 16717576
Alignment:
| Q |
211 |
atttcaatttgtgataatctcttgtctatgtgttaggtttgatttgagaatgtcaaggacttgtaataaagtg |
283 |
Q |
| |
|
|||||||||||| ||||| |||||| || || ||||||||||||||||||||| ||| |||||||| ||||| |
|
|
| T |
16717504 |
atttcaatttgtcataatttcttgtttaagttttaggtttgatttgagaatgtataggtcttgtaattaagtg |
16717576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University