View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0957_high_9 (Length: 372)
Name: NF0957_high_9
Description: NF0957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0957_high_9 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 43 - 372
Target Start/End: Complemental strand, 4742294 - 4741961
Alignment:
| Q |
43 |
taaacacaattttgagaaataaaacattctaacggcacttatggctacaatgttagcattttttagatgataataattatagcttctctttnnnnnnnnt |
142 |
Q |
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| T |
4742294 |
taaacacaattttgagaaataaaacattgttatggcacttatggctacaatgttagcattttttatatgataataatttttgcttctctttaaaaaaa-t |
4742196 |
T |
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| Q |
143 |
tgacattcatg-----atgactcctctagttaagggtgtatgtggtttaagcaaaatcgacgaaaccaaaaatttaaccaaaccaaatcgaaaaagtatt |
237 |
Q |
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| T |
4742195 |
tgacattcatgttatgataactcctcctattaggggtgtaaatggtttaagcaaaattgacgaaacaaaaaattcaactgaaccaaatggaaaacgtatt |
4742096 |
T |
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| Q |
238 |
tgacttagtctggttcagttttaaaacagaaccgaatcaacctaaagatacatttatagatagtgtcatgatgctcatagatcgtggcgcgatacttcac |
337 |
Q |
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| T |
4742095 |
agaccttgtttagtttaatttcaaaaccgaaccgtaccaatctaaagttacatttataaattgtgtcatgatactcatagatcgtggcgtgatacttcac |
4741996 |
T |
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| Q |
338 |
ttgtcttatatgtcaggaagcatcaatgtaacatt |
372 |
Q |
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| T |
4741995 |
ttgtcttttatgttaggaaacatcaatgtaacatt |
4741961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 4750378 - 4750274
Alignment:
| Q |
29 |
agtattgtggtaattaaacacaattttgagaaataaaacattctaacggcacttatggctacaatgttagcattttttagatgataataattatagcttc |
128 |
Q |
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| T |
4750378 |
agtattgtggtaattaaacacaattttgagaaataaaacattgttacggcacttatggctacaatgttagcattttttagatgataataattatagcttc |
4750279 |
T |
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| Q |
129 |
tcttt |
133 |
Q |
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| T |
4750278 |
tcttt |
4750274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 4747400 - 4747345
Alignment:
| Q |
145 |
acattcatgatgactcctctagttaagggtgtatgtggtttaagcaaaatcgacga |
200 |
Q |
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| T |
4747400 |
acattcatgatgactcctccagttaagggtgtatgtggtttaagcaaaatcgacga |
4747345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 4753325 - 4753264
Alignment:
| Q |
307 |
gatgctcatagatcgtggcgcgatacttcacttgtcttatatgtcaggaagcatcaatgtaa |
368 |
Q |
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| T |
4753325 |
gatgctcataggtcgtagcgtgatccttcacttgtcttacgtgtcacgaggcatcaatgtaa |
4753264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 4407935 - 4407870
Alignment:
| Q |
189 |
caaaatcgacgaaaccaaaaatttaac-caaaccaaatcgaaaaagtatttgacttagtctggttc |
253 |
Q |
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| T |
4407935 |
caaaaccgacgaaaccaaaagtttaaatcagaccaaatcgaaaaagtattcgacattgtctggttc |
4407870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 35954910 - 35954862
Alignment:
| Q |
189 |
caaaatcgacgaaaccaaaaattt-aaccaaaccaaatcgaaaaagtat |
236 |
Q |
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| T |
35954910 |
caaaatcgacgtaaccaaaaatttaaaccgaatcaaatcgaaaaagtat |
35954862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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