View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0957_low_13 (Length: 347)

Name: NF0957_low_13
Description: NF0957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0957_low_13
NF0957_low_13
[»] chr1 (1 HSPs)
chr1 (82-244)||(46753810-46753960)
[»] chr2 (1 HSPs)
chr2 (146-246)||(1680587-1680687)
[»] chr6 (1 HSPs)
chr6 (128-244)||(12250863-12250979)
[»] chr7 (1 HSPs)
chr7 (128-164)||(23690603-23690639)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 82 - 244
Target Start/End: Original strand, 46753810 - 46753960
Alignment:
Q  82 ataattctttacatttttgttgttgtttttatctgtcaattacatgtttggcgtgacaggaacactagagtttttcaacaaaagggggactccattaatc 181  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||    
T  46753810 ataattctttacatatttgttgttgtttttatctgtcaattacatgtt------------aacactagagtttttcaacaaaagggggactccattaatc 46753897  T
Q  182 atctcgtagaaaaggttaagtttcaattcttctagtagttgaaggcaaatcatcctagttttg 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46753898 atctcgtagaaaaggttaagtttcaattcttctagtagttgaaggcaaatcatcctagttttg 46753960  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 1680587 - 1680687
Alignment:
Q  146 ctagagtttttcaacaaaagggggactccattaatcatctcgtagaaaaggttaagtttcaattcttctagtagttgaaggcaaatcatcctagttttga 245  Q
    ||||||||||||||||||| ||| |||||||||| || ||| |||||||||||||  | |||| ||||||||  |||||| ||||||||| |||||||||    
T  1680587 ctagagtttttcaacaaaaagggtactccattaaacaactcatagaaaaggttaaactccaatccttctagtgattgaagacaaatcatcatagttttga 1680686  T
Q  246 t 246  Q
    |    
T  1680687 t 1680687  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 12250863 - 12250979
Alignment:
Q  128 tttggcgtgacaggaacactagagtttttcaacaaaagggggactccattaatcatctcgtagaaaaggttaagtttcaattcttctagtagttgaaggc 227  Q
    |||||||||||| |||  |||||||||||||||||||| || | || || | ||| ||  |||| || |||||| | |||| |||||||| |||||| ||    
T  12250863 tttggcgtgacaagaatgctagagtttttcaacaaaagaggaattcaatcattcaacttttagataaagttaagctccaatccttctagtggttgaaagc 12250962  T
Q  228 aaatcatcctagttttg 244  Q
    |||||||| || |||||    
T  12250963 aaatcatcataattttg 12250979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 23690639 - 23690603
Alignment:
Q  128 tttggcgtgacaggaacactagagtttttcaacaaaa 164  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  23690639 tttggcgtgataggaatactagagtttttcaacaaaa 23690603  T

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