View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0957_low_15 (Length: 333)
Name: NF0957_low_15
Description: NF0957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0957_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 28437905 - 28437761
Alignment:
| Q |
99 |
gtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgttgatcgtcactgcaatacccatgaagacg |
198 |
Q |
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| T |
28437905 |
gtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacaccaaaatccggtgttgatcgtcactgcaatacccatgaagacg |
28437806 |
T |
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| Q |
199 |
aacaagattcctatgatgagtttcgagtatcacattcatctcagt |
243 |
Q |
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| T |
28437805 |
aacaagattcctatgatgagtttcgagtatcacattcatttcagt |
28437761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 244
Target Start/End: Complemental strand, 28487961 - 28487816
Alignment:
| Q |
99 |
gtttcaaaggagtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgttgatcgtcactgcaatacccatgaagacg |
198 |
Q |
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| T |
28487961 |
gttttaaagaagtgaaaagaaagctcgctaaagttccattactcatgaactcgtataccaaaatccgatgttgtccctcattgcagtatccaagaagacg |
28487862 |
T |
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| Q |
199 |
aacaagattcctatgatgagtttcgagtatcacattcatctcagtc |
244 |
Q |
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| T |
28487861 |
aacaagattcctatgaagagtttgggctatcacactcatttcagtc |
28487816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 244
Target Start/End: Complemental strand, 28466189 - 28466055
Alignment:
| Q |
110 |
gtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgttgatcgtcactgcaatacccatgaagacgaacaagattcc |
209 |
Q |
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| T |
28466189 |
gtgaaaagaaagctcgctaaagtaccattactcatgaactcgtataccaaaatccgatgttgtccctcattgcagtatccaagaagacgaacaagattcc |
28466090 |
T |
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| Q |
210 |
tatgatgagtttcgagtatcacattcatctcagtc |
244 |
Q |
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| T |
28466089 |
tatgaagggtttgggctatcacactcatttcagtc |
28466055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 244
Target Start/End: Complemental strand, 28445343 - 28445209
Alignment:
| Q |
110 |
gtgaaaaggaagcttgctaaagtaccattactcatcaattcatacacaaaaatccggtgttgatcgtcactgcaatacccatgaagacgaacaagattcc |
209 |
Q |
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|||||||| ||||| |||||||| ||||||||||| || ||||| | ||||| || || || | || ||||||| ||| |||||||||||||||||| |
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| T |
28445343 |
gtgaaaagaaagctagctaaagtgccattactcattaactcatatgccaaaatgcgatgctgtccttcgttgcaatatccaagaagacgaacaagattcc |
28445244 |
T |
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| Q |
210 |
tatgatgagtttcgagtatcacattcatctcagtc |
244 |
Q |
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| T |
28445243 |
tatgatgagtttggcctatcacactcatttcagtc |
28445209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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