View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0957_low_2 (Length: 539)
Name: NF0957_low_2
Description: NF0957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0957_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 92 - 539
Target Start/End: Original strand, 8458010 - 8458457
Alignment:
| Q |
92 |
acaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaatgaaggtttgaaaactaagcattgcagttagatcttacccttttttgc |
191 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458010 |
acaacgaagggaattctccaggtacccaacattttgtcctaagtatgttaaatgaaggtttgaaaactaagcattgcagttagatcttacccttttttgc |
8458109 |
T |
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| Q |
192 |
tagtcaataagttaatttctttgtacaaactttgatgcgcatgcagtctcatgtatatcaggtattgaattcattttttcatgttaccattatttgtagg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458110 |
tagtcaataagttaatttctttgtacaaactttgatacgcatgcagtttcatgtatatcaggtattgaattcattttttcatgttaccattatttgtagg |
8458209 |
T |
|
| Q |
292 |
aagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatcagtcacatttgtagataa |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458210 |
aagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatcagtcacatttgtagataa |
8458309 |
T |
|
| Q |
392 |
tcatgatactggctcaactcaggttcttagttcactatttctcaaaataacacactgaaatacatgctcaagtgggggtgtgtatggtcagcgcaaattt |
491 |
Q |
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| T |
8458310 |
tcatgatactggctcaactcaggtttttagttcactatttctcaaaataacacactgaaatacatgctcaagtgggggtgtgtatggtcagcgcaacttt |
8458409 |
T |
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| Q |
492 |
atatgcatttttcttatttcgtatggaaactacaagcctggttatggt |
539 |
Q |
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| T |
8458410 |
atatgcatttttcttatttcgtatggaaactacaagcctggttatggt |
8458457 |
T |
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Target: chr7 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 251 - 382
Target Start/End: Complemental strand, 25802704 - 25802572
Alignment:
| Q |
251 |
aggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt |
349 |
Q |
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| T |
25802704 |
aggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt |
25802605 |
T |
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| Q |
350 |
gattggatggtggccttcaagatcagtcacatt |
382 |
Q |
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| T |
25802604 |
gattggatggtggccttcaagatcagtcacatt |
25802572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 246 - 374
Target Start/End: Complemental strand, 6827279 - 6827150
Alignment:
| Q |
246 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct |
344 |
Q |
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| T |
6827279 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattctggcgtctgcgtgatgctcaagggaagccacct |
6827180 |
T |
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| Q |
345 |
ggtgtgattggatggtggccttcaagatca |
374 |
Q |
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| T |
6827179 |
ggtgtgattggatggtggccttcaagatca |
6827150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 6827330 - 6827278
Alignment:
| Q |
92 |
acaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaat |
144 |
Q |
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| T |
6827330 |
acaaccaagggaattctccaggtacctaacattttgtcctaagtatgttaaat |
6827278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 246 - 374
Target Start/End: Original strand, 9822865 - 9822994
Alignment:
| Q |
246 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct |
344 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
9822865 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattatggcgtctgcgtgatgctcaagggaagccacct |
9822964 |
T |
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| Q |
345 |
ggtgtgattggatggtggccttcaagatca |
374 |
Q |
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| T |
9822965 |
ggtgtgattggatggtggccttcaagatca |
9822994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 9822814 - 9822866
Alignment:
| Q |
92 |
acaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaat |
144 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9822814 |
acaaccaagggaattctccaggtacctaacattttgtcctaagtatgttaaat |
9822866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 258 - 375
Target Start/End: Complemental strand, 18361263 - 18361145
Alignment:
| Q |
258 |
gaattcattttttcatgttaccattatttgtaggaagc-tgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattgga |
356 |
Q |
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| T |
18361263 |
gaattcattttctcatgttaccattatttgtaggaatcatgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattgaa |
18361164 |
T |
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| Q |
357 |
tggtggccttcaagatcag |
375 |
Q |
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| T |
18361163 |
tggtggccttcaagatcag |
18361145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 18361302 - 18361265
Alignment:
| Q |
106 |
tctccaggtacccaacattttgtcctaagtatgttaaa |
143 |
Q |
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| T |
18361302 |
tctccaggtacccagcattttgtcttaagtatgttaaa |
18361265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 27964043 - 27963964
Alignment:
| Q |
295 |
ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca |
374 |
Q |
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| T |
27964043 |
ctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca |
27963964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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