View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0957_low_24 (Length: 258)
Name: NF0957_low_24
Description: NF0957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0957_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 29421328 - 29421459
Alignment:
| Q |
95 |
ccttttatgcatttgttgaaacttgaattttttgtgttgatggctagctgtttgaagctgtcttgatttccttttaaatttgaagattaacttattaggt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
29421328 |
ccttttatgcatttgttgaaacttgaattttttgtgttgatggctagctgtttgaagctgtcttggttcccttttaaatttgaagattaacttattaggt |
29421427 |
T |
|
| Q |
195 |
ctttgccaatactttttcctctataatatata |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
29421428 |
ctttgccaatactttttcctctataatatata |
29421459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 29457189 - 29457327
Alignment:
| Q |
30 |
ctataattcaaattcttaataaaagagaactcctaagataatgatattatctacaacgaccaacaccttttatgcatttgttgaaacttgaattttttgt |
129 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || |||||| |
|
|
| T |
29457189 |
ctataattcaaattcttaataaaagtgaactcctaagataatgatattatctacaatgaccaacaccttttatgcattatttgaaacttggatcttttgt |
29457288 |
T |
|
| Q |
130 |
gttgatggctagctgtttgaagctgtcttgatttccttt |
168 |
Q |
| |
|
| ||||||||||||||| ||| |||||||||| ||||| |
|
|
| T |
29457289 |
gctgatggctagctgttggaacatgtcttgattcccttt |
29457327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 29418947 - 29419015
Alignment:
| Q |
30 |
ctataattcaaattcttaataaaagagaactcctaagataatgatattatctacaacgaccaacacctt |
98 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| | |||||||||| |
|
|
| T |
29418947 |
ctataattcaaattcctaataaaagataactcctaagataatgatataatctacaatggccaacacctt |
29419015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 29457415 - 29457467
Alignment:
| Q |
166 |
ttttaaatttgaagattaacttattaggtctttgccaatactttttcctctat |
218 |
Q |
| |
|
||||||||| ||| ||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
29457415 |
ttttaaattggaaacttaacttcttacgactttgccaatactttttcctctat |
29457467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 24337684 - 24337752
Alignment:
| Q |
30 |
ctataattcaaattcttaataaaagagaactcctaagataatgatattatctacaacgaccaacacctt |
98 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||| ||||||||| |||| |||||||| || ||||||||| |
|
|
| T |
24337684 |
ctataattcaaattgctaattaaagataactcttaagataattatataatctacaatgagcaacacctt |
24337752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 24412277 - 24412345
Alignment:
| Q |
30 |
ctataattcaaattcttaataaaagagaactcctaagataatgatattatctacaacgaccaacacctt |
98 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||| || |||||| |||| |||||||| || ||||||||| |
|
|
| T |
24412277 |
ctataattcaaattgctaattaaagataactcttatgataattatataatctacaatgagcaacacctt |
24412345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University