View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0957_low_25 (Length: 255)
Name: NF0957_low_25
Description: NF0957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0957_low_25 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 29 - 255
Target Start/End: Complemental strand, 25731825 - 25731599
Alignment:
| Q |
29 |
gatacagtcataaatccgaaagggagattatggacttgcacctataattcaattgtatctaagggcatagtataaggatctttccccaccgggaccttgc |
128 |
Q |
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| T |
25731825 |
gatacagtcataaatccgaaagggagattatggacttgcacctataattcaattgtatctaagggcatagtataaggatctttccccaccgggaccttgc |
25731726 |
T |
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| Q |
129 |
tccaaattagagggaaattgtcgaacatccatggtccttgttgaacattttgttccatttccgtataactgaagaattggaacatgaagcgattatggtc |
228 |
Q |
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| T |
25731725 |
tccaaattagagggaaattgtcaaacatccatggtccttgttgaacattttgttccctttccgtataactgaagaattggaacatgaagcgattatggtc |
25731626 |
T |
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| Q |
229 |
catcaaggagatgtccactttattttt |
255 |
Q |
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| T |
25731625 |
catcaaggagatgtccactttattttt |
25731599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 216
Target Start/End: Original strand, 16940992 - 16941174
Alignment:
| Q |
33 |
cagtcataaatccgaaagggagattatggacttgcacctataattcaattgtatctaagggcatagtataaggatctttccccaccgggaccttgctcca |
132 |
Q |
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| T |
16940992 |
cagtcataaatccaaatggcagattgtgcacttgcacc-agcattcgatggtatccaacagcatggtatagggatcattccccaccgagatcttactcca |
16941090 |
T |
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| Q |
133 |
aattagagggaaattgtcgaacatccatggtccttgttgaacattttgttccatttccgtataactgaagaattggaacatgaa |
216 |
Q |
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| T |
16941091 |
aacaagtaggaaattgtcaaacagccacggaccttgctgaacaattcgttccatgtccgcatagctgaagaattggaacatgaa |
16941174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 171
Target Start/End: Original strand, 33310074 - 33310212
Alignment:
| Q |
33 |
cagtcataaatccgaaagggagattatggacttgcacctataattcaattgtatctaagggcatagtataaggatctttccccaccgggaccttgctcca |
132 |
Q |
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||||||| || ||||| ||||||||||||||||||| | |||||||||||| |||| ||||||||| | |||||||| || | | ||||||||||| |
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| T |
33310074 |
cagtcatgaaaccgaaggggagattatggacttgcatccataattcaattgagtctatgggcatagtgaacggatcttttccatcagaaaccttgctcca |
33310173 |
T |
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| Q |
133 |
aattagagggaaattgtcgaacatccatggtccttgttg |
171 |
Q |
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| T |
33310174 |
aattagcgggtagctatcaaacaaccaaggtccttgttg |
33310212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 35317357 - 35317219
Alignment:
| Q |
33 |
cagtcataaatccgaaagggagattatggacttgcacctataattcaattgtatctaagggcatagtataaggatctttccccaccgggaccttgctcca |
132 |
Q |
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||||||| || ||||| ||||||||||||||||||| | |||||||||||| |||| ||||||||| | |||||||| || | | ||||||||||| |
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| T |
35317357 |
cagtcatgaaaccgaaggggagattatggacttgcatccataattcaattgagtctatgggcatagtgaacggatcttttccatcagaaaccttgctcca |
35317258 |
T |
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| Q |
133 |
aattagagggaaattgtcgaacatccatggtccttgttg |
171 |
Q |
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|||||| ||| | | || |||| ||| ||||||||||| |
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| T |
35317257 |
aattagcgggtagctatcaaacaaccaaggtccttgttg |
35317219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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