View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0957_low_28 (Length: 251)
Name: NF0957_low_28
Description: NF0957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0957_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 39620966 - 39621207
Alignment:
| Q |
1 |
agtaagaccaatgttgtttccataagcaagccttgaattgagcgaaaaggggtcttgagtattttgaaggaaaacgaagattcacagaatcaggagctgg |
100 |
Q |
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| T |
39620966 |
agtaagaccaatgttgtttccataagcaagccttgaattgagcgaaaaggggtcttgagtattttgaaggaaaacgaagattcacagaatcaggagctgg |
39621065 |
T |
|
| Q |
101 |
aatgctcaattctacaataagagctttgtttctcctaaaacaaacaccacaggtgtcatttcacatcagcaaattttaaatgacnnnnnnngaaagagag |
200 |
Q |
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| T |
39621066 |
aatgctcaattctacaataagagctttgtttctcctaaaacaaacaccacaggtgtcatttcacatcagcaaattttaaatgacaaaaaaagaaagagag |
39621165 |
T |
|
| Q |
201 |
acttatacttattttccatcaaattgctttctttagtattat |
242 |
Q |
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| T |
39621166 |
acttatacttattttccatcaaattgctttctttagtattat |
39621207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 39588230 - 39588278
Alignment:
| Q |
92 |
aggagctggaatgctcaattctacaataagagctttgtttctcctaaaa |
140 |
Q |
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| T |
39588230 |
aggagctggagtgctcaattcttgaataagagctttgtttctcctaaaa |
39588278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 39339904 - 39339875
Alignment:
| Q |
3 |
taagaccaatgttgtttccataagcaagcc |
32 |
Q |
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| T |
39339904 |
taagaccaatgttgtttccataagcaagcc |
39339875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 39354725 - 39354696
Alignment:
| Q |
3 |
taagaccaatgttgtttccataagcaagcc |
32 |
Q |
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| T |
39354725 |
taagaccaatgttgtttccataagcaagcc |
39354696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 39563095 - 39563124
Alignment:
| Q |
3 |
taagaccaatgttgtttccataagcaagcc |
32 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
39563095 |
taagaccaatgttgtttccataagcaagcc |
39563124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 39573734 - 39573775
Alignment:
| Q |
103 |
tgctcaattctacaataagagctttgtttctcctaaaacaaa |
144 |
Q |
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||||||| ||| ||||||||||||||||||||||| |||||| |
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| T |
39573734 |
tgctcaaatcttcaataagagctttgtttctcctataacaaa |
39573775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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