View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0957_low_33 (Length: 232)
Name: NF0957_low_33
Description: NF0957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0957_low_33 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 5470310 - 5470081
Alignment:
| Q |
1 |
gcgtcttctcctgcatcagcctccttccttttataaaaaatgtttgacgttaccaccacacagactggaagtggtccagcctttcacacgtgaagacgct |
100 |
Q |
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| T |
5470310 |
gcgtcttctcctgcatcagtctccttccttttataaaaaatgtttgatgttaccaccaca--gactggaagtggtccagcctttcacacgtgaagacgct |
5470213 |
T |
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| Q |
101 |
cctccctgctaatgctattttattcacgtgtgttatcatacatccatcaattcttttcttagccttcctatttgtggcccatcaaaaccctcttctacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5470212 |
cctccctgctaatgctattttattcacgtgtgttatcatacatccatcaattcttttcttagccttcctatttgtggcccatcaaaaccctcttctacat |
5470113 |
T |
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| Q |
201 |
cattttcccttcaaattaatccctctccactt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5470112 |
cattttcccttcaaattaatccctctccactt |
5470081 |
T |
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