View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0957_low_7 (Length: 489)
Name: NF0957_low_7
Description: NF0957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0957_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 41067123 - 41066904
Alignment:
| Q |
16 |
atggtaaagaatctcttccaattaaacaagaggtctaaagttcaaatcatatactaataatgcattagtattaaatagagttttgtcctctattaaggtc |
115 |
Q |
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| T |
41067123 |
atggtaaagaatctcttccaatttaacaagaggtctaaagttcaaatcaaatactaataatgcatcggtattaaatagagttttgtcctctattaaggtc |
41067024 |
T |
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| Q |
116 |
ttacgatctttacagtttgatttttatatcataactatttcaagagttacacatcagccatttttgtttgcccttgcaaaaagaccatctaaaatgaaga |
215 |
Q |
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| T |
41067023 |
ttacggtctttacagtttgatttttatatcataactatttcaagagttacacatcagccatttttgtttgcccttgcaaaaagaccatctaaaatgagga |
41066924 |
T |
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| Q |
216 |
atatcaatttgtgtaggtgg |
235 |
Q |
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| T |
41066923 |
acttcaatttgtgtaggtgg |
41066904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 230 - 453
Target Start/End: Complemental strand, 41063360 - 41063136
Alignment:
| Q |
230 |
aggtggcttgagactatcatcacatttcaccccctcaacgagttggccgatcaacgaatttacgaatgtttgtgaatctaagtgatatggtcactcgatc |
329 |
Q |
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| T |
41063360 |
aggtggcttgagactatcatcacatttcaccccctcaacgagttggccgatcaacgaatttacgagtgtttgtgaatctaagtgatatggtcactcgatc |
41063261 |
T |
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| Q |
330 |
caatccaacccacaatttaaatcataaaaagaaccaatataatcgcatattattttcaatcctttttcttttcaacaacatatttacattggagcctctt |
429 |
Q |
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| T |
41063260 |
caatccaacccacaatttaaatcataaaaagaaccaatgtaatcgtatattattttcaatcctttttctcttcaacaacatgtttacattggaccctctt |
41063161 |
T |
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| Q |
430 |
aaa-aaaattacaaagaaccctctc |
453 |
Q |
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| T |
41063160 |
aaaaaaaattacaatggaccctctc |
41063136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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