View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0959_high_2 (Length: 587)
Name: NF0959_high_2
Description: NF0959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0959_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 96 - 574
Target Start/End: Original strand, 13747440 - 13747918
Alignment:
| Q |
96 |
tgtttcatgttcaaaacctcaccttggaacttggctgcttgatagcttgtgaacctaaagtcatcatcttcagcactggctttcaatgcatttgttatct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13747440 |
tgtttcatgttcaaaacctcaccttggaacttggctgcttgatagcttgtgaacctaaagtcatcatcttcagcactggctttcaatgcatttgttatct |
13747539 |
T |
|
| Q |
196 |
cctcttggatgagacacaaagatgacaatctacgttgcagttcttctttcatcaaggcacttttctccacccagactgttatttcagattgaatctctgt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13747540 |
cctcttggatgagacacaaagatgacaatctacgttgcagttcttctttcatcagggcacttttctccacccagactgttatttcagattgaatctctgt |
13747639 |
T |
|
| Q |
296 |
caggtgtttgtatatcggccttgcatctgattttagagaatgctttatgcctgcactaccttcagaagactttctgttttcctcgagttttgatacctcg |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13747640 |
caggtgtttgtatatcggccttgcatctgattttagagaatgctttatgcctgcactaccttcagaagactttccgttttcctcgagttttgatacctcg |
13747739 |
T |
|
| Q |
396 |
gtttgcaaatccttgatagtggtttcaaatctctgtatctcagcataagttgtactaaattttaaccagaaagtcaagttctcctctagaatttcatcca |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13747740 |
gtttgcaaatccttgatagtggtttcaaatctctgtatctcagcataagttgtactaaattttaaccagaaagtcaagttctcctctagaatttcatcca |
13747839 |
T |
|
| Q |
496 |
tattggaccggaacttctcttcaatagctgatggagatgcaggttgatcaatttttagtagttgctgaatgtcatgttc |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13747840 |
tattggaccggaacttctcttcaatagctgatggagatgcaggttgatcaatttttagtagttgctgaatgtcatgttc |
13747918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 96 - 328
Target Start/End: Original strand, 28751479 - 28751711
Alignment:
| Q |
96 |
tgtttcatgttcaaaacctcaccttggaacttggctgcttgatagcttgtgaacctaaagtcatcatcttcagcactggctttcaatgcatttgttatct |
195 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || || || | ||||||||| ||| | || ||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
28751479 |
tgtttcatattcaaaacctctccttggaattttgcagcattatagcttgtaaacttgaaatcatcgtcttcagcactcactttcaatgctgttgttatct |
28751578 |
T |
|
| Q |
196 |
cctcttggatgagacacaaagatgacaatctacgttgcagttcttctttcatcaaggcacttttctccacccagactgttatttcagattgaatctctgt |
295 |
Q |
| |
|
| |||||||| |||||| || || ||||| |||| |||||||| |||| ||| || || || |||| ||| | ||| | |||| ||||||||||| |
|
|
| T |
28751579 |
cttcttggatttcacacaacgacgagaatctttgttgaagttcttccttcagcaacgcgctgttttccaaccataatgtgagttcattttgaatctctgc |
28751678 |
T |
|
| Q |
296 |
caggtgtttgtatatcggccttgcatctgattt |
328 |
Q |
| |
|
|||||||| || | || |||||||||||||| |
|
|
| T |
28751679 |
aaggtgtttataaagtggtcttgcatctgattt |
28751711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University