View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0959_high_5 (Length: 385)
Name: NF0959_high_5
Description: NF0959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0959_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 30 - 375
Target Start/End: Complemental strand, 3830097 - 3829754
Alignment:
| Q |
30 |
cttgtatatcatgaaaaaatccgacaaagggagagtctaactcaatcgttccaattttttgttgtattgcaaaattaagtggcaaacccggaagtcttgg |
129 |
Q |
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| T |
3830097 |
cttgtatatcatgaaaaaatctgacaaagggagagtctaactcaatcgttccaattttttgttgtattgcaaaattaagtggcaaacccggaagtcttgg |
3829998 |
T |
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| Q |
130 |
gactccaggtcttgtatacgcctaacctttttattcgcaccagccaagcactaatcatgctaccattaacaaaactctaacataaacccccacgaataaa |
229 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3829997 |
gactccgggtcttgtatacgcctaacctttttattcgcaccagccaagcactaatcatgctaccattaacaaaactctaacataaacccccacgaataaa |
3829898 |
T |
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| Q |
230 |
ctaccttggaatcccagaaaatctcaatttgaaaaatattcattttgacgagtcaagcaggtactcagatgcacactatactctccattgctannnnnnn |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3829897 |
ctaccttggaatcccagaaaatctcaatttgaaaaatattcattttgacgagtcaagcaggtactcagatgcacactatactctccattgctattttttt |
3829798 |
T |
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| Q |
330 |
naaccaatataataggatatttttatatagtgatgccacttctgtg |
375 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
3829797 |
taacca--ataataggatatttttatatagtgatgccacttttgtg |
3829754 |
T |
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