View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0959_low_1 (Length: 710)

Name: NF0959_low_1
Description: NF0959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0959_low_1
NF0959_low_1
[»] chr7 (1 HSPs)
chr7 (70-706)||(3161119-3161753)
[»] chr6 (1 HSPs)
chr6 (444-570)||(4039447-4039573)


Alignment Details
Target: chr7 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 70 - 706
Target Start/End: Complemental strand, 3161753 - 3161119
Alignment:
Q  70 atctccaacaatattggatgatatagaaggagaagaaaaatccatgccaattgatgtttgtgagnnnnnnngaaagagttgatgtttgtgagttgtcacc 169  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||       |||||||||||||||||||||||||||||    
T  3161753 atctccatcaatattggatgatatagaaggagaagaaaaaaccatgctaattgatgtttgtgagtttttt-gaaagagttgatgtttgtgagttgtcacc 3161655  T
Q  170 ctcttcttatccaatgttaccaaaacaaattgaaataatgacggaaactagagacggaaaaaataaaatttagcgtcaagtttgatctggcgtctctaat 269  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3161654 ctcttcttatccgatgttaccaaaacaaattgaaataatgacggaaactagagacggaaaaaataaaatttagcgtcaagtttggtctggcgtctctaat 3161555  T
Q  270 gcttggcgatggaattagaggctgatgttgcattttctttgtctctaaacttatgtcgctatttcaagttttacaggttgtatgtatcattcatccttat 369  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3161554 gcttggcgatgggattagaggctgatgttgcattttcttcgtctctaaatttatgtcgctatttcaagttttacaggttgtatgtatcattcatccttct 3161455  T
Q  370 tatgagcatgaattttgtttttgctacaagtcatttcgaggttggttagttcattagaaaactctcgtcccattttgttttctgattcaagtttcaactt 469  Q
    ||| |||||   |||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  3161454 tataagcatccttttt-tttttgctacaagccatttcgaggttggttagttcattagaaaactctcttcccattttgttatctgattcaagtttcaactt 3161356  T
Q  470 caagcactcaggtattccattgaaagcataaagagaagctgagaatttcctctcatatttcattctcttcatagcatttcttagcattgaagactcatca 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3161355 caagcactcaggtattccattgaaagcataaagagaagctgagaatttcctctcatatttcattctcttcatagcatttcttagcattgaagactcatca 3161256  T
Q  570 ctatcatcattgatctctaactccacatgcttctcaatatcttcatgatcaatattaaaagcagaataatagttcattgcatcatcatcaacattgtcaa 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3161255 ctatcatcattgatctctaactccacatgcttctcaatatcttcatgatcaatattaaaagcagaataatagttcattgcagcatcatcaacattgtcaa 3161156  T
Q  670 agaattgataatcttcattgtaactcaaaccagtgtt 706  Q
     ||||||| ||||||  ||| ||||||||||||||||    
T  3161155 ggaattgaaaatcttggttgaaactcaaaccagtgtt 3161119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 444 - 570
Target Start/End: Complemental strand, 4039573 - 4039447
Alignment:
Q  444 ttgttttctgattcaagtttcaacttcaagcactcaggtattccattgaaagcataaagagaagctgagaatttcctctcatatttcattctcttcatag 543  Q
    |||||| | |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||     
T  4039573 ttgtttccagattcaagtttcaatttcaagcattcaggtattccattgaatgcataaagagaagctgaaaattttctctcatatttcattctcttcataa 4039474  T
Q  544 catttcttagcattgaagactcatcac 570  Q
    ||  ||| | |||||||| ||||||||    
T  4039473 cagctctaatcattgaaggctcatcac 4039447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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