View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0959_low_13 (Length: 342)
Name: NF0959_low_13
Description: NF0959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0959_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 34 - 331
Target Start/End: Complemental strand, 38464007 - 38463709
Alignment:
| Q |
34 |
gaggagacaaattgtgtagggatgtgcgttaatatgtgcaaacttccaactcaatcgtttataaagaacaccctgggtatgccagtcaacatggtaccaa |
133 |
Q |
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| T |
38464007 |
gaggagacaaattgtgtagggatgtgcgttaatatgtgcaaacttccaactcaatcgtttataaagaacaccctgggtatgccagtcaacatggtaccaa |
38463908 |
T |
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| Q |
134 |
gtaagtatcctaacaattctaaaattaaacctaaataggaaatatcatgatgctg-aaaatgaactaagtttatctatttttagtaagtccactaaaaaa |
232 |
Q |
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| T |
38463907 |
gtaagtatcctaacaattccaaaattaaacctaaataggaaatatcatgatgctgaaaaatgaactaagtttatctatttttagtaagtccactaaaaaa |
38463808 |
T |
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| Q |
233 |
taaacaaaagaaagaatgttagttaacacacttgaaagagtatcatgacctctacaagcctccactacattgtggaggtcagcatcattattgattcat |
331 |
Q |
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| T |
38463807 |
taaacaaaagaaagaatgttagttaacacacttgaaagagtatcatggcctctacaagcctccactacattgtggaggtcagcatcattattgattcat |
38463709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 31458204 - 31458311
Alignment:
| Q |
31 |
ttagaggagacaaattgtgtagggatgtgcgttaatatgtgcaaacttccaactcaatcgtttataaagaacaccctgggtatgccagtcaacatggtac |
130 |
Q |
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||||| || ||||||||||| |||||||| ||||| | |||||| | ||| |||||| ||| |||||| || | | |||||||||||||||||||| | |
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| T |
31458204 |
ttagaagaaacaaattgtgttgggatgtgtattaatctctgcaaaatgccatctcaattgttcataaaggactcgtttggtatgccagtcaacatggtcc |
31458303 |
T |
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| Q |
131 |
caagtaag |
138 |
Q |
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| T |
31458304 |
caagtaag |
31458311 |
T |
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