View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0959_low_14 (Length: 324)
Name: NF0959_low_14
Description: NF0959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0959_low_14 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 95 - 324
Target Start/End: Complemental strand, 4491612 - 4491383
Alignment:
| Q |
95 |
gccctatatactttgtatgttatgattgaatcttctagtttatgatatatgttcccccaatctctactgtctttagtccagatgatgtgaccagaattct |
194 |
Q |
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| T |
4491612 |
gccctatatactttgtatgttatgattgaatcttctagtttatgatatatgttcccccaatctctactgtctttagtccggatgatgtgaccagaattct |
4491513 |
T |
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| Q |
195 |
aaatactccacttcatcctcagttactgaagataagcggttttggcgagtggagaataatgggaatatttggtgaacaaggcttatcacctttgtgtgca |
294 |
Q |
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| T |
4491512 |
aaatactccacttcatcctcagttaccgaagataagcggttttggcgagtggagaataatgggaatatttggtgaacaaggcttatcacctttgtgtgca |
4491413 |
T |
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| Q |
295 |
agaattaattgatacatcccctttaagatt |
324 |
Q |
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| T |
4491412 |
agaattaattgatacatcccctttaagatt |
4491383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 324
Target Start/End: Complemental strand, 4505608 - 4505395
Alignment:
| Q |
110 |
tatgttatgattgaatcttctagtttatgatatatgttcccccaatctctactgtctttagtccagatgatgtgaccagaattctaaatactccacttca |
209 |
Q |
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||||||||| ||| ||||||||||| || |||||||| || |||||||||||| ||| |||| ||| ||||||| |||||||| ||||||| || | | |
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| T |
4505608 |
tatgttatggttggatcttctagttcttgctatatgttaccaaaatctctactgttttttgtccggataatgtgactagaattcttaatactc-acgtta |
4505510 |
T |
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| Q |
210 |
tcctcagttactgaagataagcggttttggcgagtggagaataatgggaatatttggtgaacaaggcttatcacctttgtgtgcaagaattaattgatac |
309 |
Q |
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| T |
4505509 |
tcctcagttaccgaagataagcggttttggcgtgtggcgaataatgcgaatatttggtgaaaagtgattattacctttgttcgaaaaaattagttgatac |
4505410 |
T |
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| Q |
310 |
atcccctttaagatt |
324 |
Q |
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| T |
4505409 |
atctccttttagatt |
4505395 |
T |
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