View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0959_low_15 (Length: 317)
Name: NF0959_low_15
Description: NF0959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0959_low_15 |
 | |
|
| [»] scaffold0246 (1 HSPs) |
| | |
|
| [»] scaffold0262 (1 HSPs) |
| | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
| [»] scaffold0251 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 6705591 - 6705303
Alignment:
| Q |
1 |
atgactcctagacctcctcctcggaacctgctgatggtcaaacacattataatcaatcgatccgaaggccctccaaaatgccaaagaagagtggatatga |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6705591 |
atgactcctagacctcctcctcgaaacctgctgatggtcaaacacgttataatcaatcggtccgaaggccctccaaaatgccaaagaagagtggatttga |
6705492 |
T |
|
| Q |
101 |
aaccacctctggaatctgtatcgcatgctccactctatctctcatgttgttaatgacctgcaatggatcgggaggatgtctggcccactcctggtcaaca |
200 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
6705491 |
aaccacctctgaaatctgcatcgcatgctccactctgtctctcatgctgttgatgacctgcaatggatcgggaggatgtatggcccactcctagtcaaca |
6705392 |
T |
|
| Q |
201 |
agaatatcctggtacacaggtctcggcatgacaatgtcaggctctagagcagggttgacgatgagaggatgggatacacgatagaaaca |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6705391 |
agaatatcctggtacacaggtctcggcatgacaatgtcatgctctagagcagggttgacgatgagaggatgggatacacggtagaaaca |
6705303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 21566507 - 21566226
Alignment:
| Q |
1 |
atgactcctagacctcctcctcggaacctgctgatggtcaaacacattataatcaatcgatccgaaggccctccaaaatgccaaagaagagtggatatga |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||| | || | |||||||||||||||| ||||| ||||||| ||| |
|
|
| T |
21566507 |
atgactcctagacctcctcctcagaacctgctgatggtcaaacacgctataatc----ggtctgtaggccctccaaaatgctgaagaaaagtggatttga |
21566412 |
T |
|
| Q |
101 |
aaccacctctggaatctgtatcgcatgctccactctatctctcatgttgttaatgacctgcaatggatcgggaggatgtctggcccactcctggtcaaca |
200 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21566411 |
aaccacctcaggaatctgcatcgcatgctccactctgcctctcatgttgttgatgacttgcaatggatcaggaggatgtctggcccactcctggtcaaca |
21566312 |
T |
|
| Q |
201 |
agaatatcctggtacacaggtctcggcatgacaatgtcaggctctagagcagggttgacgatgagaggatgggatacacgatagaa |
286 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||| |
|
|
| T |
21566311 |
agaatatcctggtagacaggtctcggcatgaaaatgtcaggctcttgagcagggttgacgataagaggatggcatacacggtagaa |
21566226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 39685804 - 39686085
Alignment:
| Q |
1 |
atgactcctagacctcctcctcggaacctgctgatggtcaaacacattataatcaatcgatccgaaggccctccaaaatgccaaagaagagtggatatga |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||||| ||||||| | | || |||| |||||| |||| |||||||||||||| | | |
|
|
| T |
39685804 |
atgactcctagacctcctcctcggtacctactgatcgtcaaacacgctataatc----ggttcggaggctctccaagatgctaaagaagagtggatttaa |
39685899 |
T |
|
| Q |
101 |
aaccacctctggaatctgtatcgcatgctccactctatctctcatgttgttaatgacctgcaatggatcgggaggatgtctggcccactcctggtcaaca |
200 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39685900 |
aaccacctctggaatctgcatggcatgctccactctacctctgatgttgttgatgacctgcaatggatcgggaggatgtctgacccactcctggtcaaca |
39685999 |
T |
|
| Q |
201 |
agaatatcctggtacacaggtctcggcatgacaatgtcaggctctagagcagggttgacgatgagaggatgggatacacgatagaa |
286 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39686000 |
tgaatatcctggtacacaggtctcggcacgacaatgtcaggctctggagcagggttgacgatgagaggatgggatacacggtagaa |
39686085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 55 - 286
Target Start/End: Original strand, 44430700 - 44430931
Alignment:
| Q |
55 |
aatcgatccgaaggccctccaaaatgccaaagaagagtggatatgaaaccacctctggaatctgtatcgcatgctccactctatctctcatgttgttaat |
154 |
Q |
| |
|
||||| |||| ||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||| || | || |
|
|
| T |
44430700 |
aatcggtccggaggccctccaagatgctgaagaagagtggatttgaaaccacctctggaatctgcatcgcatgctccactctgcctctaatgctgctgat |
44430799 |
T |
|
| Q |
155 |
gacctgcaatggatcgggaggatgtctggcccactcctggtcaacaagaatatcctggtacacaggtctcggcatgacaatgtcaggctctagagcaggg |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
44430800 |
gacctgcaatggatcgggaggatgtctggcccactcctagtcaacaagaatatcctggtacacaggtctcggcatgacaatgtcaggctatggagcaggg |
44430899 |
T |
|
| Q |
255 |
ttgacgatgagaggatgggatacacgatagaa |
286 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
44430900 |
ttgacgatgagaggatgggatacacggtagaa |
44430931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 32 - 286
Target Start/End: Complemental strand, 53814186 - 53813937
Alignment:
| Q |
32 |
tgatggtcaaacacattataatcaatcgatccgaaggccctccaaaatgccaaagaagagtggatatgaaaccacctctggaatctgtatcgcatgctcc |
131 |
Q |
| |
|
||||||||||||||| ||||||| | || | ||||||||||||||||||||||||| ||||| |||| |||||||| ||||||| |||||||||||| |
|
|
| T |
53814186 |
tgatggtcaaacacactataatc----ggtctggaggccctccaaaatgccaaagaagaatggatttgaa-ccacctctagaatctgcatcgcatgctcc |
53814092 |
T |
|
| Q |
132 |
actctatctctcatgttgttaatgacctgcaatggatcgggaggatgtctggcccactcctggtcaacaagaatatcctggtacacaggtctcggcatga |
231 |
Q |
| |
|
||||| ||||||||| || | |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| |
|
|
| T |
53814091 |
actctgtctctcatgctgctgatgacctgcaatggattgggaggatgtctggcccactcctggtcaacaataatatcctagtagacaggtctcggcatga |
53813992 |
T |
|
| Q |
232 |
caatgtcaggctctagagcagggttgacgatgagaggatgggatacacgatagaa |
286 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| | ||||||| |||||| |
|
|
| T |
53813991 |
caatgtcaggctctggagcaaggttgacgatgagaggaggagatacactatagaa |
53813937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 13840185 - 13839904
Alignment:
| Q |
1 |
atgactcctagacctcctcctcggaacctgctgatggtcaaacacattataatcaatcgatccgaaggccctccaaaatgccaaagaagagtggatatga |
100 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| ||||||||| | ||||| | || | ||||| ||||| |||| ||||| ||| ||| ||| |
|
|
| T |
13840185 |
atgactcctagacctcttccttggaacctgctgatcgtcaaacacgctgtaatc----ggtctggaggccttccaagatgctgaagaatagtagatttga |
13840090 |
T |
|
| Q |
101 |
aaccacctctggaatctgtatcgcatgctccactctatctctcatgttgttaatgacctgcaatggatcgggaggatgtctggcccactcctggtcaaca |
200 |
Q |
| |
|
|||||||||| |||| || |||||||||| |||| | ||| ||| || | |||| ||| |||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
13840089 |
aaccacctctcgaatgtgcatcgcatgctacactatgcttctaatgctgctgatgatctggaatggatcgggaggatgtctagcccactactggtcaaca |
13839990 |
T |
|
| Q |
201 |
agaatatcctggtacacaggtctcggcatgacaatgtcaggctctagagcagggttgacgatgagaggatgggatacacgatagaa |
286 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13839989 |
agaatatcctggtacataggtctcggcatgacaatgtcaggctctagagcagggttgacgatgagaggatgggatacacggtagaa |
13839904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 11423435 - 11423483
Alignment:
| Q |
153 |
atgacctgcaatggatcgggaggatgtctggcccactcctggtcaacaa |
201 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11423435 |
atgacctggaatggatcgggaggatgtctggcccactcctgctcaacaa |
11423483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 24902233 - 24902167
Alignment:
| Q |
66 |
aggccctccaaaatgccaaagaagagtggatatgaaaccacctctggaatctgtatcgcatgctcca |
132 |
Q |
| |
|
|||||||||||||||| ||| || ||||||| |||||||||||| |||||| || |||||||||| |
|
|
| T |
24902233 |
aggccctccaaaatgctaaaaaatagtggatttgaaaccacctcaagaatctccattgcatgctcca |
24902167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 25403469 - 25403199
Alignment:
| Q |
1 |
atgactcctagacctcctcctcggaacctgctgatggtcaaacacattataatcaatcgatccgaaggccctccaaaatgccaaagaagagtggatatga |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||| |||||||| | | | | |||||| || ||| ||||||||||||| || |
|
|
| T |
25403469 |
atgactcctatacctcctcctcggaacctgctgatcgtcaaacacgttataatc----ggtttggatgccctctaagatgttgaagaagagtggattaga |
25403374 |
T |
|
| Q |
101 |
aaccacctctggaatctgtatcgcatgctccactctatctctcatgttgttaatgacctgcaatggatcgggaggatgtctggcccactcctggtcaaca |
200 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| |||||||||||| | |||||||||||||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
25403373 |
aaccacctctggaatctgcatcacatgctccactctgtctctcatgttgctgatgacctgcaatgggtcgggaggatgtctggtccactcttggtcaaca |
25403274 |
T |
|
| Q |
201 |
agaatatcctggtacacaggtctcggcatgacaatgtcaggctctagagcagggttgacgatgagaggatgggat |
275 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25403273 |
agaatttcctggtagacaggtctcggcatgacaatgtcaggctctagagcagggttgacgatgagaggatgggat |
25403199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 2030206 - 2030052
Alignment:
| Q |
69 |
ccctccaaaatgccaaagaagagtggatatgaaaccacctctggaatctgtatcgcatgctccactctatctctcatgttgttaatgacctgcaatggat |
168 |
Q |
| |
|
|||||||||||| || |||||||||| |||| ||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
2030206 |
ccctccaaaatgttgaaaaagagtggatttgaagccacctctggaatctccatcgcatgctccactcggactctcatgttgttgatgacctgcaatggat |
2030107 |
T |
|
| Q |
169 |
cgggaggatgtctggcccactcctggtcaacaagaatatcctggtacacaggtct |
223 |
Q |
| |
|
| ||||||||| || |||||||||| ||||||| || || ||||| |||||||| |
|
|
| T |
2030106 |
caggaggatgtttgacccactcctgctcaacaataacctcttggtagacaggtct |
2030052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 34131353 - 34131300
Alignment:
| Q |
233 |
aatgtcaggctctagagcagggttgacgatgagaggatgggatacacgatagaa |
286 |
Q |
| |
|
||||||||||||| ||| |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
34131353 |
aatgtcaggctctggaggagggttgacgataagaggatgggatacacggtagaa |
34131300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 2030028 - 2029989
Alignment:
| Q |
247 |
gagcagggttgacgatgagaggatgggatacacgatagaa |
286 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
2030028 |
gagcagggttgacgataagaggatgggatacacggtagaa |
2029989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 942695 - 942414
Alignment:
| Q |
1 |
atgactcctagacctcctcctcggaacctgctgatggtcaaacacattataatcaatcgatccgaaggccctccaaaatgccaaagaagagtggatatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| ||||||||| ||||||| | || | |||||||| || ||| ||||||||||||| | |
|
|
| T |
942695 |
atgactcctagacctcctcctcggaacttgttgatcgtcaaacacgctataatc----ggtctggaggccctctaagatgttgaagaagagtggattaaa |
942600 |
T |
|
| Q |
101 |
aaccacctctggaatctgtatcgcatgctccactctatctctcatgttgttaatgacctgcaatggatcgggaggatgtctggcccactcctggtcaaca |
200 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
942599 |
aaccacctctggaatttgcatcgcatgctccactctgcctctcatgttgttgatgacctgcaaagggtcgggaggatgtctagcccactcctggtcaaca |
942500 |
T |
|
| Q |
201 |
agaatatcctggtacacaggtctcggcatgacaatgtcaggctctagagcagggttgacgatgagaggatgggatacacgatagaa |
286 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
942499 |
agaatatcctggtagacaggcctcggcatgacaatgtcaggctctggagcatggttgacgatgagaggatgggatacacggtagaa |
942414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 49030846 - 49031118
Alignment:
| Q |
1 |
atgactcctagacctcctcctcggaacctgctgatggtcaaacacattataatcaatcgatccgaaggccctccaaaatgccaaagaagagtggatatga |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| | |||| |||||||| || ||| ||||||||||||| || |
|
|
| T |
49030846 |
atgactcctagacctcctcctcg-aacctgctgatcgtcaaacacgctataatc----ggtccggaggccctctaagatgttgaagaagagtggattaga |
49030940 |
T |
|
| Q |
101 |
aaccacctctggaatctgtatcgcatgctccactctatctctcatgttgttaatgacctgcaatggatcgggaggatgtctggcccactcctggtcaaca |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||| || | ||||| |||||||| ||||||||||||||||||| ||||||||||| | |
|
|
| T |
49030941 |
aaccacctctggaatctggatcgcatgctccactctgcctctcatgctgctgatgacatgcaatgggtcgggaggatgtctggcccgctcctggtcaata |
49031040 |
T |
|
| Q |
201 |
agaatatcctggtacacaggtctcggcatgacaatgtcaggctctagagcagggttgacgatgagaggatgggataca |
278 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
49031041 |
agaatatcctggtagacaggtctcagcatgacaatgtcaggctctggagcagggttgacgatgagaggatgggataca |
49031118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 48957145 - 48957010
Alignment:
| Q |
66 |
aggccctccaaaatgccaaagaagagtggatatgaaaccacctctggaatctgtatcgcatgctccactctatctctcatgttgttaatgacctgcaatg |
165 |
Q |
| |
|
|||||||||||||||| || |||||||||| |||||||||||||||||||| |||| ||||||||| | |||||||| |||| ||||||||||||| |
|
|
| T |
48957145 |
aggccctccaaaatgctgaaaaagagtggatgtgaaaccacctctggaatctccatcgtctgctccactttgactctcatgctgttgatgacctgcaatg |
48957046 |
T |
|
| Q |
166 |
gatcgggaggatgtctggcccactcctggtcaacaa |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
48957045 |
gatcgggaggatgtctagcccactcctgctcaacaa |
48957010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 28445977 - 28445846
Alignment:
| Q |
1 |
atgactcctagacctcctcctcggaacctgctgatggtcaaacacattataatcaatcgatccgaaggccctccaaaatgccaaagaagagtggatatga |
100 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||| ||||||| | ||| ||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
28445977 |
atgactcctagacctcgtcctcggaacatgctgatggtcaaacacgctataatc----ggtccagaggccctccaaaatgtcaaagaagagtggatttga |
28445882 |
T |
|
| Q |
101 |
aaccacctctggaatctgtatcgcatgctccactct |
136 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||| |
|
|
| T |
28445881 |
aaccacctctggaatctgcatcgcatgcttcactct |
28445846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 28445846 - 28445795
Alignment:
| Q |
235 |
tgtcaggctctagagcagggttgacgatgagaggatgggatacacgatagaa |
286 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
28445846 |
tgtcaggcgctggagcagggtcaacgatgagaggatgggatacacggtagaa |
28445795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 2288 - 2026
Alignment:
| Q |
1 |
atgactcctagacctcctcctcggaacctgctgatggtcaaacacattataatcaatcgatccgaaggccctccaaaatgccaaagaagagtggatatga |
100 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||| ||||||||| ||| ||||| |||| |||||||| || |||| ||||||| ||||| || |
|
|
| T |
2288 |
atgacccctagacttcctcctcggaacctgctgatcgtcaaacacgctat----aatcggtccggaggccctctaagatgctgaagaagaatggattaga |
2193 |
T |
|
| Q |
101 |
aaccacctctggaatctgtatcgcatgctccactctatctctcatgttgttaatgacctgcaatggatcgggaggatgtctggcccactcctggtcaaca |
200 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||||||| |||||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
2192 |
aaccacccctggaatcttcatcacatgctccactctgcctctcatgctgttgatgacctgcaaagggtcgggaggatgtctggcccactcctggtcaaca |
2093 |
T |
|
| Q |
201 |
agaatatcctggtacacaggtctcggcatgacaatgtcaggctctagagcagggttgacgatgagag |
267 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
2092 |
agaatatcctggtagacaggtctcggcatgacaatgtcaggttctggagcagggttgacgatgagag |
2026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 628711 - 628985
Alignment:
| Q |
1 |
atgactcctagacctcctcctcggaacctgctgatggtcaaacacattataatcaatcgatccgaaggccctccaaaatgccaaagaagagtggatatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||| || |||||||| ||| ||||||||||||| || |
|
|
| T |
628711 |
atgactcctagacctcctcctcggaacctgctgatcgtcaaacacgctataatc----ggtccggagcccctccaagttgctgaagaagagtggattaga |
628806 |
T |
|
| Q |
101 |
aaccacctctggaatctgtatcgcatgctccactctatctctcatgttgttaatgacctgcaatggatcgggaggatgtctggcccactcctggtcaaca |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| |||||||| || ||||||||||| || ||| |||||||||||||||||| || ||||||| |
|
|
| T |
628807 |
aaccacctctggaatctgcatcgcatgctccaatctgcctctcatgctgcggatgacctgcaaagggtcgagaggatgtctggcccactactagtcaaca |
628906 |
T |
|
| Q |
201 |
agaatatcctggtacacaggtctcggcatgacaatgtcaggctctagagcagggttgacgatgagaggatgggatacac |
279 |
Q |
| |
|
|||||||||||||| | ||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
628907 |
agaatatcctggtagaagggtcttgacatgacaatgtcaggctctggagcagggttgacgatgagaggatgggatacac |
628985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 51719266 - 51719153
Alignment:
| Q |
1 |
atgactcctagacctcctcctcggaacctgctgatggtcaaacacattataatcaatcgatccgaaggccctccaaaatgccaaagaagagtggatatga |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| ||||||||| ||| ||||| |||| ||||||||||| |||| ||||||||||||| ||| |
|
|
| T |
51719266 |
atgagtcctagacctcctcctcggaacctgatgatcgtcaaacacgctat----aatcggtccggaggccctccaagatgcttaagaagagtggatttga |
51719171 |
T |
|
| Q |
101 |
aaccacctctggaatctg |
118 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
51719170 |
aaccacctctggaatctg |
51719153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 223
Target Start/End: Complemental strand, 38653429 - 38653298
Alignment:
| Q |
92 |
tggatatgaaaccacctctggaatctgtatcgcatgctccactctatctctcatgttgttaatgacctgcaatggatcgggaggatgtctggcccactcc |
191 |
Q |
| |
|
||||| ||||||| |||| ||||||| || |||||| ||| ||| |||| |||||| |||| ||| ||||| ||||||||||||||||||||||| |
|
|
| T |
38653429 |
tggatttgaaacctcctcaggaatctccattgcatgcgccagtctggctctgatgttgccgatgatctggaatgggtcgggaggatgtctggcccactct |
38653330 |
T |
|
| Q |
192 |
tggtcaacaagaatatcctggtacacaggtct |
223 |
Q |
| |
|
|| ||||||| || |||||||| |||||||| |
|
|
| T |
38653329 |
tgctcaacaataacctcctggtagacaggtct |
38653298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 42704950 - 42704991
Alignment:
| Q |
163 |
atggatcgggaggatgtctggcccactcctggtcaacaagaa |
204 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
42704950 |
atgggtcgggaggatgtctggcccactgctgctcaacaagaa |
42704991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 66 - 286
Target Start/End: Original strand, 8873 - 9093
Alignment:
| Q |
66 |
aggccctccaaaatgccaaagaagagtggatatgaaaccacctctggaatctgtatcgcatgctccactctatctctcatgttgttaatgacctgcaatg |
165 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||| ||||| || ||| |||| || ||||||||||||||| |
|
|
| T |
8873 |
aggccctccaaaatgccgaagaagagtggatttgaaaccaccttcggaatctgcatcgcatgttccaccctgcctcgcatgctggtaatgacctgcaatg |
8972 |
T |
|
| Q |
166 |
gatcgggaggatgtctggcccactcctggtcaacaagaatatcctggtacacaggtctcggcatgacaatgtcaggctctagagcagggttgacgatgag |
265 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |||||||| || |
|
|
| T |
8973 |
gatcgggatgatgtctggcccactcctggtcaacaagaatatcctggtagacaggtctcggcatgacaatgtcagactcttgagcagtgttgacgagaag |
9072 |
T |
|
| Q |
266 |
aggatgggatacacgatagaa |
286 |
Q |
| |
|
|||||| |||||| ||||||| |
|
|
| T |
9073 |
aggatgtgatacatgatagaa |
9093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 9387358 - 9387093
Alignment:
| Q |
10 |
agacctcctcctcggaacctgctgatggtcaaacacattataatcaatcgatccgaaggccctccaaaatgccaaagaagagtggatatgaaaccacctc |
109 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| ||||||| | || | | |||||| || |||| ||||||||| || ||||||||||| |
|
|
| T |
9387358 |
agacctcctcctcggaacctgttgattgtcaaacacgctataatc----ggtctggatgccctctaagatgctgaagaagagtaaattagaaaccacctc |
9387263 |
T |
|
| Q |
110 |
tggaatctgtatcgcatgctccactctatctctcatgttgttaatgacctgcaatggatcgggaggatgtctggcccactcctggtcaacaagaatatcc |
209 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| || | |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9387262 |
tggaatctccatcgcatgctccactctgcctctcatgctgctgatgacctgcaatgggtcggaaggatgtctggcctactcctggtcaacaagaatatcc |
9387163 |
T |
|
| Q |
210 |
tggtacacaggtctcggcatgacaatgtcaggctctagagcagggttgacgatgagaggatgggatacac |
279 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||||| |||| ||||||| ||||||||||||| |||||| |
|
|
| T |
9387162 |
tggtagacaggtcttgacatgagaatgtcaggctctggagctgggttgatgatgagaggatggaatacac |
9387093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 12947613 - 12947479
Alignment:
| Q |
66 |
aggccctccaaaatgccaaagaagagtggatatgaaaccacctctggaatctgtatcgcatgctccactctatctctcatgttgttaatgacctgcaatg |
165 |
Q |
| |
|
||||||||||||||| || ||||||| || |||| ||||||||| |||| ||| ||||||||||||| || ||||| |||| ||||| ||||||| |
|
|
| T |
12947613 |
aggccctccaaaatgttgaaaaagagtg-atttgaagccacctctgaaatccccatcacatgctccactctgactttcatgctgttgatgacatgcaatg |
12947515 |
T |
|
| Q |
166 |
gatcgggaggatgtctggcccactcctggtcaacaa |
201 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
12947514 |
gatcgggaggatgtctgacccactcctgctcaacaa |
12947479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 41799165 - 41799291
Alignment:
| Q |
1 |
atgactcctagacctcctcctcggaacctgctgatggtcaaacacattataatcaatcgatccgaaggccctccaaaatgccaaagaagagtggatatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| |||||||| || |||| ||||||||||||| || |
|
|
| T |
41799165 |
atgactcctagacctcctcctcggaacctgctgatcgtcaaacacgctat----aatcgatccggaggccctctaagatgctcaagaagagtggattaga |
41799260 |
T |
|
| Q |
101 |
aaccacctctggaatctgtatcgcatgctcc |
131 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| |
|
|
| T |
41799261 |
aaccacatctggaatctgcatcgcatgctcc |
41799291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 1326623 - 1326698
Alignment:
| Q |
129 |
tccactctatctctcatgttgttaatgacctgcaatggatcgggaggatgtctggcccactcctggtcaacaagaa |
204 |
Q |
| |
|
|||||||| |||| |||||| | |||| ||| |||| |||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
1326623 |
tccactctggctctgatgttgctgatgatctgatatgggtcgggaggatgtctggcccactgctgctcaacaagaa |
1326698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 24087 - 24216
Alignment:
| Q |
1 |
atgactcctagacctcctcctcggaacctgctgatggtcaaacacattataatcaatcgatccgaaggccctccaaaatgccaaagaagagtggatatga |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||| ||| ||||| |||| |||||||| || |||| ||||||||||||| || |
|
|
| T |
24087 |
atgactcctatacctcctcctcggaacctgctgatcgtcaaacacgctat----aatcgttccggaggccctctaagatgctgaagaagagtggattaga |
24182 |
T |
|
| Q |
101 |
aaccacctctggaatctgtatcgcatgctccact |
134 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
24183 |
aaccacctctggaatctgcatcgcatgctccact |
24216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 16789 - 16830
Alignment:
| Q |
163 |
atggatcgggaggatgtctggcccactcctggtcaacaagaa |
204 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
16789 |
atgggtcgggaggatgtctggcccactgctgctcaacaagaa |
16830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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