View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0959_low_22 (Length: 303)

Name: NF0959_low_22
Description: NF0959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0959_low_22
NF0959_low_22
[»] chr8 (5 HSPs)
chr8 (83-239)||(9948061-9948217)
chr8 (83-232)||(8945597-8945746)
chr8 (81-183)||(8958322-8958424)
chr8 (127-231)||(8963382-8963486)
chr8 (127-231)||(8974778-8974882)
[»] chr1 (1 HSPs)
chr1 (81-232)||(34962380-34962531)
[»] chr2 (1 HSPs)
chr2 (81-231)||(21686761-21686911)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 83 - 239
Target Start/End: Complemental strand, 9948217 - 9948061
Alignment:
Q  83 gcaactcctcttgcattaggagctagttatgttgatactactagagcacttgaccccggtcttctttatgacgttggtgcacaagattatgttaatcttc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9948217 gcaactcctcttgcattaggagctagttatgttgatactactagagcgcttgaccccggtcttctttatgacgttggtgcacaagattatgttaatcttc 9948118  T
Q  183 tctatggacttaacttcacacagaaacatatcactagcattacaagatccacattca 239  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9948117 tctatggacttaacttcacacagaaacatatcactaccattacaagatccacattca 9948061  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 83 - 232
Target Start/End: Complemental strand, 8945746 - 8945597
Alignment:
Q  83 gcaactcctcttgcattaggagctagttatgttgatactactagagcacttgaccccggtcttctttatgacgttggtgcacaagattatgttaatcttc 182  Q
    ||||||||||||||||| |||||| ||||||||||| | | ||||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||    
T  8945746 gcaactcctcttgcattgggagctggttatgttgatcccaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttc 8945647  T
Q  183 tctatggacttaacttcacacagaaacatatcactagcattacaagatcc 232  Q
    | | || ||||||||||||||| ||| | |||||||  ||||||||||||    
T  8945646 tttgtgcacttaacttcacacaaaaaaacatcactacgattacaagatcc 8945597  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 8958322 - 8958424
Alignment:
Q  81 cagcaactcctcttgcattaggagctagttatgttgatactactagagcacttgaccccggtcttctttatgacgttggtgcacaagattatgttaatct 180  Q
    ||||||||||| ||||||| |||||| || ||||| || | | ||||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||    
T  8958322 cagcaactccttttgcattgggagctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgttggtgtacaagattatgttaatct 8958421  T
Q  181 tct 183  Q
    |||    
T  8958422 tct 8958424  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 8963382 - 8963486
Alignment:
Q  127 agcacttgaccccggtcttctttatgacgttggtgcacaagattatgttaatcttctctatggacttaacttcacacagaaacatatcactagcattaca 226  Q
    |||||||||||| |||||| |||||||  |||||| |||||||||||||||| |||| | || ||||||||||||||| ||||| || |||  ||| |||    
T  8963382 agcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttgtgcacttaacttcacacaaaaacacattactgccataaca 8963481  T
Q  227 agatc 231  Q
    |||||    
T  8963482 agatc 8963486  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 8974778 - 8974882
Alignment:
Q  127 agcacttgaccccggtcttctttatgacgttggtgcacaagattatgttaatcttctctatggacttaacttcacacagaaacatatcactagcattaca 226  Q
    ||||||| |||| || ||| ||||||| ||||||| |||||||||||| |||||||| | || ||| ||||||||||| ||| | ||||||| |||||||    
T  8974778 agcacttaaccctggacttgtttatgatgttggtgtacaagattatgtcaatcttctttgtgcactcaacttcacacaaaaaaacatcactatcattaca 8974877  T
Q  227 agatc 231  Q
    |||||    
T  8974878 agatc 8974882  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 232
Target Start/End: Complemental strand, 34962531 - 34962380
Alignment:
Q  81 cagcaactcctcttgcattaggagctagttatgttgatactactagagcacttgaccccggtcttctttatgacgttggtgcacaagattatgttaatct 180  Q
    ||||||| ||| ||||||| |||||| || ||||| || ||| ||||||||||||||| |||||| ||||||| ||||||| |||||||||||| |||||    
T  34962531 cagcaacaccttttgcattgggagctggtcatgttaatcctaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgtgaatct 34962432  T
Q  181 tctctatggacttaacttcacacagaaacatatcactagcattacaagatcc 232  Q
    ||| | || |||||| | | |||| ||| | ||||||| ||| |||||||||    
T  34962431 tctttgtgcacttaaatactcacaaaaaaacatcactaccatcacaagatcc 34962380  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 231
Target Start/End: Complemental strand, 21686911 - 21686761
Alignment:
Q  81 cagcaactcctcttgcattaggagctagttatgttgatactactagagcacttgaccccggtcttctttatgacgttggtgcacaagattatgttaatct 180  Q
    ||||||||||| ||||||| |||||| || || || |  ||| |||||||||||| || |||||| |||||||  | |||| |||||||||| |||||||    
T  21686911 cagcaactccttttgcattgggagctggtcatattaaccctaatagagcacttgatcctggtcttgtttatgatatcggtgtacaagattatattaatct 21686812  T
Q  181 tctctatggacttaacttcacacagaaacatatcactagcattacaagatc 231  Q
    ||| | || ||||||||||||||| ||| | |||| |  ||||||||||||    
T  21686811 tctttgtgcacttaacttcacacaaaaaaacatcagtgccattacaagatc 21686761  T

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