View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0959_low_27 (Length: 294)

Name: NF0959_low_27
Description: NF0959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0959_low_27
NF0959_low_27
[»] chr5 (1 HSPs)
chr5 (3-294)||(13748008-13748299)


Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 3 - 294
Target Start/End: Complemental strand, 13748299 - 13748008
Alignment:
Q  3 gatgtcgaagaatatccatctaagacggggaataatcttggcgttgatcacaaagagcaggaaacaacaccagatgatgaaccggattggcggaaaatgt 102  Q
    |||||| || || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13748299 gatgtcaaacaagatccatctaagacggggaataatcttggagttgatcacaaagagcaggaaacaacaccagatgatgaaccggattggcggaaaatgt 13748200  T
Q  103 ttctggatggaatgcaggatagagaaaaagcacttctaaccgagtacactaatactcttcggaattacaaagatgttaagaagaggctcgccgaaataga 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13748199 ttctggatggaatgcaggatagagaaaaagcacttctaaccgagtacactaatactcttcggaattacaaagatgttaagaagaggctcgccgaaataga 13748100  T
Q  203 ggacaaaaatcaagacaaaaccttggattcttgtttgcaattgcagttaaatgaactgaagacatctaatttcttgaaagatcaagaaataa 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  13748099 ggacaaaaatcaagacaaaaccttggattcttgtttgcaattgcagttaaatgaactgaagacgtctaattacttgaaagatcaagagataa 13748008  T

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