View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0959_low_28 (Length: 281)
Name: NF0959_low_28
Description: NF0959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0959_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 47292922 - 47292680
Alignment:
| Q |
11 |
ttattcttaagtgactttgtatttgattatcagattcaaaatcagtatcagaactaaatccatacttcagtaaaataagacaaggatagaagtagataca |
110 |
Q |
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| T |
47292922 |
ttattcttaagtgactttgtatttgattatcagattcaaaatcagtatcagaactaaatccatacttcagtaaaataagacaaggatagaagcagataca |
47292823 |
T |
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| Q |
111 |
agcaaatatcaagcctgacacggtcttttaaatattaatacggttctatttccatttcacccagaaaacaagcatagattgttgattgaagcgccaataa |
210 |
Q |
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| T |
47292822 |
agcaaatatcaagcctgacacggtcttttaaatattaatacggttctatttccatttcacccagaaaacaagcatagattgttgattgaagcgccaataa |
47292723 |
T |
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| Q |
211 |
gcatcttaaaaatattaatatttgattttcagattaaaatcat |
253 |
Q |
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| T |
47292722 |
gcatcttaaaaatattaatatttgattttcagattaaaatcat |
47292680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 47293306 - 47293060
Alignment:
| Q |
15 |
tcttaagtgactttgtatttgattatcagattcaaaatcagtatcaga---actaaatccat----acttcagtaaaataagacaaggatagaagtagat |
107 |
Q |
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| T |
47293306 |
tcttaagtgacttggtattttattatcggactcaaaatcagtattagatgaactaaatgcatctaaacttgagtagaacaagacaaggatagaagcatat |
47293207 |
T |
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| Q |
108 |
acaagcaaatatcaagcctgacacggtcttttaaat-attaatacggttctatttccatttcacccagaaaacaagcatagattgttgattgaagcgcca |
206 |
Q |
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| T |
47293206 |
acagacaaatatcaagcttgacgcagtcttttaaaacattgctacggttctatttccattttacctagaaaacaagcatagattg-taattgaatattga |
47293108 |
T |
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| Q |
207 |
ataagcatcttaaaa-atattaatatttgattttcagattaaaatcat |
253 |
Q |
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| T |
47293107 |
atatgcatcttaaaataacttgatatttgattatcagattaaaatcat |
47293060 |
T |
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