View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0959_low_31 (Length: 251)
Name: NF0959_low_31
Description: NF0959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0959_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 51490660 - 51490855
Alignment:
| Q |
8 |
cgaagaatattataaatcaaataattaattgattttgtttcaaactaagacgggataatacacttacgaatcttagaagtgactttagactcatcaatgt |
107 |
Q |
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| T |
51490660 |
cgaataatattataaatcaaataattaattgattttgtttcaaactaagacgggataatacacttacggatcgtagaaatgaatttagactcatcaatgt |
51490759 |
T |
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| Q |
108 |
aggattaaaagtacatacaatcactttttaattgagtttgatgaacatagggtaatgataaaaatattttataacataaaagaaccaactcgttac |
203 |
Q |
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| T |
51490760 |
aggattaaaagtacatacaatcactttttaattgagtttgatgaacatagggtaatggtaaaaatattttataacataaaagaaccaactcgttac |
51490855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 14201550 - 14201487
Alignment:
| Q |
16 |
attataaatcaaataattaattgattttgtttcaaactaagacgggataatacacttacgaatc |
79 |
Q |
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| T |
14201550 |
attataaatcaagtaatcaatcaattttgtttcaaaccaagaccgaataatacacttatgaatc |
14201487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 20500439 - 20500477
Alignment:
| Q |
13 |
aatattataaatcaaataattaattgattttgtttcaaa |
51 |
Q |
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| T |
20500439 |
aatattataaatcaagtaattgattgattttgtttcaaa |
20500477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 20710799 - 20710857
Alignment:
| Q |
132 |
tttttaattgagtttgatgaacatagggtaatgataaaaatattttataacataaaaga |
190 |
Q |
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| T |
20710799 |
tttttaattgagtttgatgaaaagaggataatggtgaaaatattttatgacttaaaaga |
20710857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 48685802 - 48685742
Alignment:
| Q |
13 |
aatattataaatcaaataattaattgattttgtttcaaactaagacgggataatacactta |
73 |
Q |
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| T |
48685802 |
aatattataaataaaataatcaatcaattttgtttcaaattaagatttgataatacactta |
48685742 |
T |
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