View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0959_low_8 (Length: 356)

Name: NF0959_low_8
Description: NF0959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0959_low_8
NF0959_low_8
[»] chr4 (5 HSPs)
chr4 (165-308)||(54641250-54641393)
chr4 (166-307)||(54938074-54938214)
chr4 (195-308)||(54641620-54641733)
chr4 (8-86)||(54641075-54641153)
chr4 (8-60)||(54642470-54642522)
[»] chr7 (2 HSPs)
chr7 (166-305)||(13078297-13078436)
chr7 (166-242)||(6082221-6082297)
[»] chr3 (3 HSPs)
chr3 (166-305)||(39984048-39984187)
chr3 (166-233)||(35389071-35389138)
chr3 (166-230)||(2386599-2386663)
[»] chr2 (3 HSPs)
chr2 (166-305)||(14685323-14685462)
chr2 (166-305)||(40422147-40422286)
chr2 (166-305)||(21307179-21307314)
[»] chr1 (5 HSPs)
chr1 (166-242)||(10583719-10583795)
chr1 (166-242)||(49123075-49123151)
chr1 (8-60)||(16890221-16890273)
chr1 (166-221)||(23541321-23541376)
chr1 (8-60)||(34996546-34996598)
[»] scaffold0227 (1 HSPs)
scaffold0227 (167-242)||(12038-12113)
[»] chr6 (1 HSPs)
chr6 (166-242)||(18132106-18132182)
[»] chr5 (2 HSPs)
chr5 (166-233)||(29526368-29526435)
chr5 (172-242)||(39701944-39702014)
[»] chr8 (1 HSPs)
chr8 (8-58)||(21661114-21661164)
[»] scaffold0026 (1 HSPs)
scaffold0026 (166-230)||(80522-80586)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 165 - 308
Target Start/End: Original strand, 54641250 - 54641393
Alignment:
Q  165 aaaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaa 264  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54641250 aaaagaatcaccttgtcctcaaggtgagggataacagaagtgtccaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaa 54641349  T
Q  265 cttatgccttgatcatatactctgtttgtagtgatatttttgat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  54641350 cttatgccttgatcatatactctgtttgtagtgatatttttgat 54641393  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 166 - 307
Target Start/End: Original strand, 54938074 - 54938214
Alignment:
Q  166 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaac 265  Q
    ||||| ||||||| |||||||||||| ||||| || |||||| |||| ||||||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  54938074 aaagattcaccttatcctcaaggtgaaggatatcataagtgtccacctgggtcccataact-gaagtataatgacagagcgatgtgtgaatcatgcaaac 54938172  T
Q  266 ttatgccttgatcatatactctgtttgtagtgatatttttga 307  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  54938173 ttatgccctgatcatatactctgtttgtagtgatatttttga 54938214  T

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Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 195 - 308
Target Start/End: Original strand, 54641620 - 54641733
Alignment:
Q  195 ataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaacttatgccttgatcatatactctgtttgta 294  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  54641620 ataacaaaagtgtccaccagggtcccataacttgaagtataatgatagagcgatatgtgaatcatgcaaacttatgccttgatcatatactctgtttgta 54641719  T
Q  295 gtgatatttttgat 308  Q
    ||||||||||||||    
T  54641720 gtgatatttttgat 54641733  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 54641075 - 54641153
Alignment:
Q  8 ccaataatatgcctatcgacattgtccttcagatcccttatttatccagtaaccagtccccaagtatttcccctgttcc 86  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  54641075 ccaataaaatgcctatcgacattgtccttcagatcccttatttatccagcaaccagtccccaagtatttcccctgttcc 54641153  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 54642470 - 54642522
Alignment:
Q  8 ccaataatatgcctatcgacattgtccttcagatcccttatttatccagtaac 60  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  54642470 ccaataaaatgcctatcgacattgtccttcagatcccttatttatccagtaac 54642522  T

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Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 166 - 305
Target Start/End: Complemental strand, 13078436 - 13078297
Alignment:
Q  166 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaac 265  Q
    ||||| |||||||||||||||||||| ||||| || |||||| |||| ||||||||||||||||||||||||||||| |   ||||||||||||||||||    
T  13078436 aaagattcaccttgtcctcaaggtgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaac 13078337  T
Q  266 ttatgccttgatcatatactctgtttgtagtgatattttt 305  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  13078336 ttatgccttgatcatataccctgtttgtggtgatattttt 13078297  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 6082297 - 6082221
Alignment:
Q  166 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacag 242  Q
    ||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| | ||||||    
T  6082297 aaagattcaccttgtcctcaaggtgaaggataacataagtgtccaccagggtcccataacttgaagtagagtgacag 6082221  T

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Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 166 - 305
Target Start/End: Original strand, 39984048 - 39984187
Alignment:
Q  166 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaac 265  Q
    ||||| |||||||||||||||||||| ||||| || |||||| |||| ||||||||||||||||||||||||||||| |   ||||||||||||||||||    
T  39984048 aaagattcaccttgtcctcaaggtgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaac 39984147  T
Q  266 ttatgccttgatcatatactctgtttgtagtgatattttt 305  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  39984148 ttatgccttgatcatataccctgtttgtggtgatattttt 39984187  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 35389138 - 35389071
Alignment:
Q  166 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagta 233  Q
    ||||| |||||||||||||||| ||| |||||||| |||||| ||||||| |||||||||||||||||    
T  35389138 aaagattcaccttgtcctcaagttgaaggataacataagtgtccaccaggatcccataacttgaagta 35389071  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 2386599 - 2386663
Alignment:
Q  166 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaa 230  Q
    ||||| |||||||||||||||||||| ||||| || |||||| |||||| ||||||||| |||||    
T  2386599 aaagattcaccttgtcctcaaggtgaaggatagcataagtgtccaccagagtcccataagttgaa 2386663  T

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Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 166 - 305
Target Start/End: Complemental strand, 14685462 - 14685323
Alignment:
Q  166 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaac 265  Q
    ||||| |||||||||||||||||||| ||||| || |||||| |||| ||||||||||||||||||||||||||||| |   ||||||||||||||||||    
T  14685462 aaagattcaccttgtcctcaaggtgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaac 14685363  T
Q  266 ttatgccttgatcatatactctgtttgtagtgatattttt 305  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  14685362 ttatgccttgatcatataccctgtttgtggtgatattttt 14685323  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 166 - 305
Target Start/End: Complemental strand, 40422286 - 40422147
Alignment:
Q  166 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaac 265  Q
    ||||| |||||||||||||||||||| ||||| || |||||| |||| ||||||||||||||||||||||||||||| |   ||||||||||||||||||    
T  40422286 aaagattcaccttgtcctcaaggtgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaac 40422187  T
Q  266 ttatgccttgatcatatactctgtttgtagtgatattttt 305  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  40422186 ttatgccttgatcatataccctgtttgtggtgatattttt 40422147  T

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Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 166 - 305
Target Start/End: Complemental strand, 21307314 - 21307179
Alignment:
Q  166 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaac 265  Q
    ||||| |||||||||||||||||||| |||    | |||||| |||| ||||||||||||||||||||||||||||| |   ||||||||||||||||||    
T  21307314 aaagattcaccttgtcctcaaggtgaagga----ataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaac 21307219  T
Q  266 ttatgccttgatcatatactctgtttgtagtgatattttt 305  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  21307218 ttatgccttgatcatataccctgtttgtggtgatattttt 21307179  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 10583795 - 10583719
Alignment:
Q  166 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacag 242  Q
    ||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| | ||||||    
T  10583795 aaagattcaccttgtcctcaaggtgaaggataacataagtgtccaccagggtcccataacttgaagtagagtgacag 10583719  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 49123151 - 49123075
Alignment:
Q  166 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacag 242  Q
    ||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| | ||||||    
T  49123151 aaagattcaccttgtcctcaaggtgaaggataacataagtgtccaccagggtcccataacttgaagtagagtgacag 49123075  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 16890221 - 16890273
Alignment:
Q  8 ccaataatatgcctatcgacattgtccttcagatcccttatttatccagtaac 60  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  16890221 ccaataaaatgcctatcgacattgtccttaagatcccttatttatccagtaac 16890273  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 23541321 - 23541376
Alignment:
Q  166 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtccca 221  Q
    ||||| |||| ||||||||||||| | |||||||| |||||| |||||||||||||    
T  23541321 aaagattcacgttgtcctcaaggtaaaggataacataagtgtccaccagggtccca 23541376  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 34996598 - 34996546
Alignment:
Q  8 ccaataatatgcctatcgacattgtccttcagatcccttatttatccagtaac 60  Q
    ||||||| |||||||  ||||||||||||||||| || |||||||| ||||||    
T  34996598 ccaataaaatgcctactgacattgtccttcagattccctatttatctagtaac 34996546  T

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Target: scaffold0227 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 12113 - 12038
Alignment:
Q  167 aagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacag 242  Q
    |||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| | ||||||    
T  12113 aagattcaccttgtcctcaaggtgaaggataacataagtgtccaccagggtcccataacttgaagtagagtgacag 12038  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 18132106 - 18132182
Alignment:
Q  166 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacag 242  Q
    ||||| |||||||||||||||||||| |||||| | |||||| ||||||||||||||||||||||||| | ||||||    
T  18132106 aaagattcaccttgtcctcaaggtgaaggataaaataagtgtccaccagggtcccataacttgaagtagagtgacag 18132182  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 29526368 - 29526435
Alignment:
Q  166 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagta 233  Q
    ||||| |||||||||||||||||||| |||| ||| |||||| |||||||||||||||||||||||||    
T  29526368 aaagattcaccttgtcctcaaggtgaaggatgacataagtgtccaccagggtcccataacttgaagta 29526435  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 39701944 - 39702014
Alignment:
Q  172 tcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaagtataatgacag 242  Q
    |||||||||||||||||||| |||||| | |||||| ||||||||||||| ||||||||||| ||||||||    
T  39701944 tcaccttgtcctcaaggtgaaggataatataagtgtccaccagggtcccaaaacttgaagtacaatgacag 39702014  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 21661164 - 21661114
Alignment:
Q  8 ccaataatatgcctatcgacattgtccttcagatcccttatttatccagta 58  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||||||||    
T  21661164 ccaataaaatgcctactgacattgtccttcagatcccttatttatccagta 21661114  T

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Target: scaffold0026 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 80586 - 80522
Alignment:
Q  166 aaagaatcaccttgtcctcaaggtgagggataacagaagtgtgcaccagggtcccataacttgaa 230  Q
    ||||| |||||||||||||||||||| ||| || | |||||| ||||| ||||||||||||||||    
T  80586 aaagattcaccttgtcctcaaggtgaaggacaagataagtgtccaccatggtcccataacttgaa 80522  T

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