View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0960_low_1 (Length: 774)
Name: NF0960_low_1
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0960_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 29 - 511
Target Start/End: Original strand, 5422828 - 5423309
Alignment:
| Q |
29 |
aagatgatgaaaagtgtacatgccacacaaataaatggtgaatgtagcaataaagaacaccatagtatcttgccatccaatagagtactgagactgtgtt |
128 |
Q |
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| T |
5422828 |
aagatgatgaaaagtgtacatgccacacaaataaatggtaaatgtagcaataaagaacgccatagtatcttgccatccaatagagtactgagactgtgtt |
5422927 |
T |
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| Q |
129 |
tgaattggaaccattgaggattggtatgttgaaggattaggaaatggtaaccatagtgatctttgcattgagatggaattttattatctttgttgtgaat |
228 |
Q |
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| T |
5422928 |
tgaattggaaccattgaggattggtatgttgaaggattaggaaatggtaaccatagtgatctttgcattgagatggaattttattttctttgttgtcaat |
5423027 |
T |
|
| Q |
229 |
tttcttgcataacaatataaggcctagagtactatatgttggagggaagaaaataatagattgaagaagacttgtagttgagataagaattagaattgga |
328 |
Q |
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| T |
5423028 |
tttcttgcataacaatataaggcctagagtactatatgttggagggaagaaaataatagattgaagaagacttgtagttgagataagaattagaattgga |
5423127 |
T |
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| Q |
329 |
attagaattagaagtgttgttcggttgttagttactagctagctttctatacttaacaaacagccaactgttttaatgtgagaatattggtgggtatttg |
428 |
Q |
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| T |
5423128 |
attagaattagaagtgttgttcggttgttagttactagctagctttctatacttaacaaacagccaactgttttaatgtgagaatattggtgggtatttg |
5423227 |
T |
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| Q |
429 |
actgacaagtatactttcatgtgttaaaaagcatgaaatgaaatatttatgcatcaagtcagtaagaatggagaggaaactaa |
511 |
Q |
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| T |
5423228 |
actgacaagtatactttcatgtgttaaaaagcatgaaatgaaata-ttatgcatcaagtcagtaagaatggagaggaaactaa |
5423309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 578 - 762
Target Start/End: Original strand, 5423366 - 5423549
Alignment:
| Q |
578 |
attaattatagagtgcatatttgaattggttattgaaaagnnnnnnnn-cgcatatatatgtgtggtcgttagagagagagaaaaataccaatttgattt |
676 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5423366 |
attaattattgagtgcatatttgaattggttattgaaaagaaaaaaaaacgcatatatatgtgtggtcgttagag--agagaaaaataccaatttgattt |
5423463 |
T |
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| Q |
677 |
tcagaaatcttaaataccaatgaagataaaatgtgtcataatcataaaagactagttatattggtatatagataagtggcaagaat |
762 |
Q |
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| T |
5423464 |
tcagaaatcttaaatgccaatcaagataaaatgtgtcataatcataaaagactagttatattggtatatagataagtggcaagaat |
5423549 |
T |
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