View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0960_low_10 (Length: 437)
Name: NF0960_low_10
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0960_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 207 - 424
Target Start/End: Complemental strand, 34995540 - 34995321
Alignment:
| Q |
207 |
tatcttttcatcttcatcacttgtatgtagaagaatcaatc--tgccatctaccaatttatctagttatgcctttagtgtgttttgttattttaaagcaa |
304 |
Q |
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| T |
34995540 |
tatcttttcatcttcatcacttgtatgtagaagaatcaatctatgtcatctgaataaaaagattgtcatcacttgtgtttgttttgttattttaaagcaa |
34995441 |
T |
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| Q |
305 |
ttttcatgaaaaatgtgaaacgtgaacgggatctcttcatttgtaacaaaataaaactaaaacaaaagaggacgaataacgtgaaatagatctgatctcg |
404 |
Q |
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| T |
34995440 |
ttttcatgaataatgtgaaatgtgaacgggatctgttcatctgtaacaaaataaaactaaaacaaaagaggaccaagaacgtgaaatagatctgatctcg |
34995341 |
T |
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| Q |
405 |
ccgcctcacctctcttgttc |
424 |
Q |
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| T |
34995340 |
ccgcctcacctctcttgttc |
34995321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 34995628 - 34995546
Alignment:
| Q |
89 |
tatcaatcattagattaaaattagatggtcaagattaaaaaacaaaccatgtgcattcccttattgtattatttttatctaac |
171 |
Q |
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| T |
34995628 |
tatcaatcattagattaaaattagatggtcaagattaaaaaacaaaccatgtgtattcccttattgtattatttttatctaac |
34995546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 34994941 - 34994973
Alignment:
| Q |
92 |
caatcattagattaaaattagatggtcaagatt |
124 |
Q |
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| T |
34994941 |
caatcattagattaaaattagatggtcaagatt |
34994973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 14394699 - 14394743
Alignment:
| Q |
84 |
ataattatcaatcattagattaaaattagatggtcaagattaaaa |
128 |
Q |
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| T |
14394699 |
ataattatcaatcattagataaaaaatagatggttgagattaaaa |
14394743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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