View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0960_low_15 (Length: 388)
Name: NF0960_low_15
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0960_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 46 - 378
Target Start/End: Complemental strand, 46379392 - 46379075
Alignment:
| Q |
46 |
acaaaaagaatgatcacataaatcaactacattgtatataggagaaagtagataacctagcttcgtgagttatcataggttaaataattacagataggga |
145 |
Q |
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| T |
46379392 |
acaaaaagaatgatcacataaatcaactacattgtatataggagaaagtagataacctagcttcgtgagttatcataggttaaataattacaaataggga |
46379293 |
T |
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| Q |
146 |
agaatctcaccgtacctaaattttgatgaagaatctcccccacttggta-ttcgtcggaaaactacccttaattttctatgaaggtttaaagaatgtgag |
244 |
Q |
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| T |
46379292 |
agaatctcaccgtacctaaattttgatgaagaatctcccccacttggtatttagtcg--aaacta-----aattt----tga-----tgaagaatgtgag |
46379209 |
T |
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| Q |
245 |
agtaagaaacggtcaaggtaaagtaagcgagacaaagatatatacgagattgaagaagttgtgccttctactgccggtattgtaatgttgtagttttttg |
344 |
Q |
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| T |
46379208 |
agtaagaaacggtcaaggtaaagtaagcgagacaaagatatatacgagattgaagaagttgtgccttctactgccggtattgtaatgttgtagttttttg |
46379109 |
T |
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| Q |
345 |
aatcattgtttgttacaacgcctctatgcctatg |
378 |
Q |
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| T |
46379108 |
aatcattgtttgttacaacgcctctatgcctatg |
46379075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 35710741 - 35710700
Alignment:
| Q |
6 |
attaagctaattgatgctaagtccggtcgtttcgcgtgacac |
47 |
Q |
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| T |
35710741 |
attaagctaattgatgctaagtccggtcgtttcgcgtgacac |
35710700 |
T |
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