View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0960_low_16 (Length: 351)
Name: NF0960_low_16
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0960_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 121 - 246
Target Start/End: Original strand, 1606479 - 1606604
Alignment:
| Q |
121 |
agatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606479 |
agatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggc |
1606578 |
T |
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| Q |
221 |
tgatcttagcgccacagcttgaccct |
246 |
Q |
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||||||||||||||| |||||||||| |
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| T |
1606579 |
tgatcttagcgccactgcttgaccct |
1606604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 121 - 246
Target Start/End: Original strand, 1629777 - 1629902
Alignment:
| Q |
121 |
agatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1629777 |
agatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggacgc |
1629876 |
T |
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| Q |
221 |
tgatcttagcgccacagcttgaccct |
246 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1629877 |
tgatcttagcgccacagcttgaccct |
1629902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 1623601 - 1623721
Alignment:
| Q |
121 |
agatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggc |
220 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| || |||||||||||||| |
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| T |
1623601 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgatatagcacaccgatagaagacagagagatcggaggc |
1623700 |
T |
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| Q |
221 |
tgatcttagcgccacagcttg |
241 |
Q |
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||||| |||||||||||||| |
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| T |
1623701 |
tgatcggagcgccacagcttg |
1623721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 121 - 246
Target Start/End: Complemental strand, 10820921 - 10820796
Alignment:
| Q |
121 |
agatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggc |
220 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||| ||||| | |||||| ||||| || |||||||| ||||| |
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| T |
10820921 |
agatgaagcattgtctgtaaaattgacgttgtgcatgagccatgagggtgtcttggtaacccgatattgtacaccggtagaagacggagagatcagaggc |
10820822 |
T |
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| Q |
221 |
tgatcttagcgccacagcttgaccct |
246 |
Q |
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||||| |||||||| |||||||||| |
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| T |
10820821 |
tgatcggagcgccactgcttgaccct |
10820796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 121 - 244
Target Start/End: Original strand, 18781295 - 18781418
Alignment:
| Q |
121 |
agatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggc |
220 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||||| || |||||||| || || ||||| |||||||||||||| || |||||||||||||| |
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| T |
18781295 |
agatgaagcattgtctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatatagcacaccgatagaagacagagagatcggaggc |
18781394 |
T |
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| Q |
221 |
tgatcttagcgccacagcttgacc |
244 |
Q |
| |
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||||| ||||||||||||||||| |
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| T |
18781395 |
tgatcggagcgccacagcttgacc |
18781418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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