View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0960_low_18 (Length: 334)
Name: NF0960_low_18
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0960_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 32 - 271
Target Start/End: Complemental strand, 52995513 - 52995274
Alignment:
| Q |
32 |
tctctttctcttttataactaaattattttcattttggtctaattaattaggtgatcaaaattgtagtgatcaagatgtcttcttctgaaggagggaaaa |
131 |
Q |
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| T |
52995513 |
tctctttctcttttataactaaattattttcattttggtctaattaattaggtgatcaaaattgtagtgatcaagatgtcttcttctgaaggagggaaaa |
52995414 |
T |
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| Q |
132 |
agttgcaaaaaagctactttgatgtggtgggattatgttgttcctcagaggtacctctgattgaaaacattctcaaacctcttcaaggtgtcaaagaggt |
231 |
Q |
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| T |
52995413 |
agttgcaaaaaagctactttgatgtggtgggattatgttgttcctcagaggtacctctgattgaaaacattctcaaacctcttcaaggtgtcaaagaggt |
52995314 |
T |
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| Q |
232 |
ttctgttatagttccatcaagaacagtcatcgttgttcat |
271 |
Q |
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| T |
52995313 |
ttctgttatagttccatcaagaacagtcatcgttgttcat |
52995274 |
T |
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