View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0960_low_2 (Length: 674)
Name: NF0960_low_2
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0960_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 9 - 579
Target Start/End: Original strand, 32553848 - 32554418
Alignment:
| Q |
9 |
caacaatatcaacaacaataattccaacaatagcaataatctatcagttatctttgattcacaagaagaaattgacaatgacatttctgcctcaatagat |
108 |
Q |
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| T |
32553848 |
caacaatatcaacaacaataattccaacaatagcaataatctatcagttatctttgattcacaagaagaaattgacaatgacatttctgcctcaatagat |
32553947 |
T |
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| Q |
109 |
ttctcactatcaccatctttcaatgttccttcattccttccagtcacatcatcacagcaagtagaacaatttgatttctcttctgtgcagcctcatcatg |
208 |
Q |
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| T |
32553948 |
ttctcactatcaccatctttcaatgttccttcattccttccagtcacatcatcacagcaagtagagcaatttgatttctcttctgtacagcctcatcatg |
32554047 |
T |
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| Q |
209 |
ttcaacttacagcatgttcatctgttgatgggttttcgcagtatcataatccgaatgattcagttgcacctcttatgggagctcccttatcattaccatc |
308 |
Q |
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| T |
32554048 |
ttcaacttaccgcatgttcatccgttgatgggttttcgcagtatcataatccaaatgattcagttgcacctcttatgggagctcccttatcattaccatc |
32554147 |
T |
|
| Q |
309 |
tgtttttgaagaggattgcattacttctgtaccttcttatgttcctttgaacccttcttctccttcttgcaattatcttggtcctgccggcatggcggca |
408 |
Q |
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| T |
32554148 |
tgtttttgaagaggattgcattacttctgtaccttcttatgttcctttgaacccttcttctccttcttgcaattatcttggtcctgccggtatggcggca |
32554247 |
T |
|
| Q |
409 |
tacatgcctaatggttctcttactactgccttgtctactgatagttctggtttgtttggaggaaatatggtttttagttctgaaattcagacacaagaac |
508 |
Q |
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| T |
32554248 |
tacatgcctaatggttctcttaccactgctttgtctactgatagttctggtttgtttggtggaaatatggtttttggttctgaaattcagacacaagaac |
32554347 |
T |
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| Q |
509 |
ttgattatcaaggagataatggtagaatttattgtcctgatcctattcagagggtgtttaaccctcctgac |
579 |
Q |
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| T |
32554348 |
ttgattatcaaggagataatggtagaatttattgtcctgatcctattcagagggtgtttaaccctcctgac |
32554418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 16921253 - 16921324
Alignment:
| Q |
57 |
tatctttgattcacaagaagaaattgacaatgacatttctgcctcaatagatttctcactatcaccatcttt |
128 |
Q |
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| T |
16921253 |
tatctttgattcacaagaagatcttgacaatgacatttcagcttctatagatttcacatcatcacaatcttt |
16921324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 543
Target Start/End: Original strand, 16921639 - 16921697
Alignment:
| Q |
485 |
gttctgaaattcagacacaagaacttgattatcaaggagataatggtagaatttattgt |
543 |
Q |
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| T |
16921639 |
gttctgaaatgcagacacaagatttggattatcaaggtgaaaatggtggaatttattgt |
16921697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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