View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0960_low_21 (Length: 319)
Name: NF0960_low_21
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0960_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 19833153 - 19833290
Alignment:
| Q |
85 |
gatgaagatgaaagcaagagtccactttataatagaattgatgtcaattacatcaatggggaaagtgttgagccttttacactagacatggtatttgata |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19833153 |
gatgaagatgaaagcaagagtccactttataatagaattgatgtcaattacatcaatggggaaagtgttgagccttttacactagacatgatatttgatc |
19833252 |
T |
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| Q |
185 |
ttgaaaacagaattgagaagcttgaaagagtgttttct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
19833253 |
ttgaaaacagaattgagaagcttgaaagagtgttttct |
19833290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 19957428 - 19957565
Alignment:
| Q |
85 |
gatgaagatgaaagcaagagtccactttataatagaattgatgtcaattacatcaatggggaaagtgttgagccttttacactagacatggtatttgata |
184 |
Q |
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||||||||||||| |||||||||| ||||| |||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19957428 |
gatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttttacactagacatggtatttgatc |
19957527 |
T |
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| Q |
185 |
ttgaaaacagaattgagaagcttgaaagagtgttttct |
222 |
Q |
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|||||||||| ||||||||||||||||||||| ||||| |
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| T |
19957528 |
ttgaaaacaggattgagaagcttgaaagagtggtttct |
19957565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 20035338 - 20035201
Alignment:
| Q |
85 |
gatgaagatgaaagcaagagtccactttataatagaattgatgtcaattacatcaatggggaaagtgttgagccttttacactagacatggtatttgata |
184 |
Q |
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||||||||||||| ||||||||| ||||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
20035338 |
gatgaagatgaaataaagagtccattttatgatagaaatgatgtcaatgacatcaatggggaaaatgttgagccttttacactagacatggaatttgatc |
20035239 |
T |
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| Q |
185 |
ttgaaaacagaattgagaagcttgaaagagtgttttct |
222 |
Q |
| |
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||||||||||||| || ||||||||||||||| ||||| |
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| T |
20035238 |
ttgaaaacagaatggaaaagcttgaaagagtggtttct |
20035201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 19839776 - 19839913
Alignment:
| Q |
85 |
gatgaagatgaaagcaagagtccactttataatagaattgatgtcaattacatcaatggggaaagtgttgagccttttacactagacatggtatttgata |
184 |
Q |
| |
|
||||||||||||| |||||||| | ||||| |||||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||| | ||||| |
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| T |
19839776 |
gatgaagatgaaatcaagagtctattttatgatagaaatgatgtcaatgacatcaatggggaaattgttgagccttttacactaaacatggaaattgatc |
19839875 |
T |
|
| Q |
185 |
ttgaaaacagaattgagaagcttgaaagagtgttttct |
222 |
Q |
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|||||||||| || |||||||||||||||||| ||||| |
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| T |
19839876 |
ttgaaaacaggatcgagaagcttgaaagagtggtttct |
19839913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 19819859 - 19819996
Alignment:
| Q |
85 |
gatgaagatgaaagcaagagtccactttataatagaattgatgtcaattacatcaatggggaaagtgttgagccttttacactagacatggtatttgata |
184 |
Q |
| |
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||||||||||||| |||||||| | ||||| |||||| |||||||||| |||||||||| |||| |||||||| |||||||||||| |||||| ||||| |
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| T |
19819859 |
gatgaagatgaaatcaagagtctattttatgatagaaatgatgtcaatgacatcaatggcgaaaatgttgagcgttttacactagagatggtacttgatc |
19819958 |
T |
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| Q |
185 |
ttgaaaacagaattgagaagcttgaaagagtgttttct |
222 |
Q |
| |
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|||||||||| || |||||||||||||||||| ||||| |
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| T |
19819959 |
ttgaaaacaggatcgagaagcttgaaagagtggtttct |
19819996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 19850355 - 19850488
Alignment:
| Q |
85 |
gatgaagatgaaagcaagagtccactttataatagaattgatgtcaattacatcaatggggaaagtgttgagccttttacactagacatggtatttgata |
184 |
Q |
| |
|
||||||||||||| ||||| |||| ||| | || ||| ||||||| || |||||| ||||||| ||||||| ||||||| | || |||| | ||||||| |
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| T |
19850355 |
gatgaagatgaaatcaagaatccattttgtgatggaaatgatgtccatgacatcagtggggaaggtgttgatccttttagagtatacatagaatttgatc |
19850454 |
T |
|
| Q |
185 |
ttgaaaacagaattgagaagcttgaaagagtgtt |
218 |
Q |
| |
|
|||||||||| ||||||||| |||| | |||||| |
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| T |
19850455 |
ttgaaaacaggattgagaagtttgataaagtgtt |
19850488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 20006061 - 20005925
Alignment:
| Q |
86 |
atgaagatgaaagcaagagtccactttataatagaattgatgtcaattacatcaatggggaaagtgttgagccttttacactagacatggtatttgatat |
185 |
Q |
| |
|
|||||||||||| ||| | |||| ||| | |||||| ||||||| || ||| ||||||||| ||||| ||||||||| |||| |||| ||||||| | |
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| T |
20006061 |
atgaagatgaaatcaaaaatccattttgtgatagaaatgatgtcgatgccattaatggggaaggtgttagtccttttacattagatatggcatttgatct |
20005962 |
T |
|
| Q |
186 |
tgaaaacagaattgagaagcttgaaagagtgttttct |
222 |
Q |
| |
|
|||| | || ||| ||||||||||| |||| |||||| |
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|
| T |
20005961 |
tgaagagaggattaagaagcttgaacgagtattttct |
20005925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 19813662 - 19813707
Alignment:
| Q |
177 |
atttgatattgaaaacagaattgagaagcttgaaagagtgttttct |
222 |
Q |
| |
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||||||| |||||||||| |||||||| |||||||||||||||||| |
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| T |
19813662 |
atttgatcttgaaaacaggattgagaaacttgaaagagtgttttct |
19813707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 211
Target Start/End: Original strand, 27473108 - 27473234
Alignment:
| Q |
85 |
gatgaagatgaaagcaagagtccactttataatagaattgatgtcaattacatcaatggggaaagtgttgagccttttacactagacatggtatttgata |
184 |
Q |
| |
|
||||||||||||| ||||| | || ||| | || || |||||||||| |||||| |||||||||| |||| || |||| | || |||||| ||||||| |
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| T |
27473108 |
gatgaagatgaaatcaagaattcattttgtgatgaaaatgatgtcaatgacatcagtggggaaagtattgatccatttagagtatacatggaatttgatc |
27473207 |
T |
|
| Q |
185 |
ttgaaaacagaattgagaagcttgaaa |
211 |
Q |
| |
|
|||||||||| ||| |||||||||||| |
|
|
| T |
27473208 |
ttgaaaacaggattcagaagcttgaaa |
27473234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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